Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03608 ATGGCGAGGGAGAAGATTCAGATTAGGAAGATCGACAACGCCACCGCCAGGCAGGTTACGTTCTCCAAGCGTCGCAGAGGGCTCTTCAAGAAAGCCGAGGAGCTTTCCGTTCTCTGTGATGCTGATGTTGCTCTCATAATCTTCTCTTCTACTGGGAAGCTCTTTGAGTACTCAAGCTCCAGGTCTTTCTTTTCTGCAGCTTCTCTTTCTTTTCTCACTGTTTATGTCTTAAAAGAGTTTATGGGGTTTTGGGTTGGGGAGGCTGAAGATAAGATCTATATCTATATTGAGAGTTTTTCAGAACTTAGCTAG 312 0.4487 MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEYSSSRSFFSAASLSFLTVYVLKEFMGFWVGEAEDKIYIYIESFSELS 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03608 103 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vimu7g03608 103 SUPERFAMILY SRF-like 3 63 IPR036879 GO:0003677|GO:0046983
Vimu7g03608 103 Gene3D - 13 70 IPR036879 GO:0003677|GO:0046983
Vimu7g03608 103 CDD MADS_MEF2_like 2 57 IPR033896 GO:0000977|GO:0045944
Vimu7g03608 103 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vimu7g03608 103 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vimu7g03608 103 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vimu7g03608 103 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vimu7g03608 103 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vimu7g03608 103 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vimu7g03608 103 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03608 Vimu-Chr7 30903394 30903705 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03608 1 60 MADS-box Gene Family AT2G22540 96.667 4.85e-36 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vimu7g03608 SRF-TF 2.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03608 - - zju:107425139 111.694