Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03601 ATGGTTACATCGTCACTTTGTGTCAATGATTGTGGTTTTTATGGTTCTCCTACAACAAATAACCTTTGTTCAAAGTGTTATAAAGATTATCTCGCCAAATCAAATGGTTGTGAAACGAGCACCAAGAGGTTTTGTTTGGAGAAGTCATCATCATCATCATGTAGTGTTCAAAGTGAAGGTTCTATCATTGATGACACGATTTCTCTTTCTATCACAAATTCTAAGGCAAGTGAGAAGAATGATAGAAAGAGATGCAAGAGTTGCAATAAGAAGATTGGGTTATTAGGGTTTCAATGTCGTTGTGGAGATGTTTTCTGTGGAATACACAGATATCCTGAGATGCATTCATGCGAAATAGACTTTAAGAAAATTGGTCGTGAAGTTTTAATTCAACAAAATCCTTTATGCAAAGCTGATAAACTAAAACATAGGATTTGA 438 0.347 MVTSSLCVNDCGFYGSPTTNNLCSKCYKDYLAKSNGCETSTKRFCLEKSSSSSCSVQSEGSIIDDTISLSITNSKASEKNDRKRCKSCNKKIGLLGFQCRCGDVFCGIHRYPEMHSCEIDFKKIGREVLIQQNPLCKADKLKHRI 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03601 145 ProSiteProfiles Zinc finger A20-type profile. 1 35 IPR002653 GO:0003677|GO:0008270
Vimu7g03601 145 PANTHER AN1-TYPE ZINC FINGER PROTEIN 4 142 - -
Vimu7g03601 145 Pfam AN1-like Zinc finger 85 120 IPR000058 GO:0008270
Vimu7g03601 145 FunFam Zinc finger AN1-type containing 6 60 140 - -
Vimu7g03601 145 SMART A20_3 4 28 IPR002653 GO:0003677|GO:0008270
Vimu7g03601 145 SUPERFAMILY AN1-like Zinc finger 74 139 IPR035896 -
Vimu7g03601 145 Gene3D - 2 61 - -
Vimu7g03601 145 SMART AN1_Zf_4 85 122 IPR000058 GO:0008270
Vimu7g03601 145 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 45 - -
Vimu7g03601 145 ProSiteProfiles Zinc finger AN1-type profile. 79 125 IPR000058 GO:0008270
Vimu7g03601 145 Pfam A20-like zinc finger 5 28 IPR002653 GO:0003677|GO:0008270
Vimu7g03601 145 Gene3D - 62 140 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03601 Vimu-Chr7 30836855 30837292 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03601 3 142 C2H2 Transcription Factor Family AT3G52800 40.127 6.85e-31 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03601 - - gmx:102666624 171.785