Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03599 ATGGCTCTTCCTGGTTCCCTGCAGTTGTCCCATGGATTGGGACTTTGCAGGAACCTGGGCTGCAATAAACATTCGAGGGCAACGGGACATGGCAAGTTACAGTTATTTAGGGCAGGTCTTTCATATTCTATTTCGCTTGGTTCAGGGTCCGGGTCAGGCCAACCAAATGATCTTCCTGCTGTTAAGGCAGCTGCTACCGTGTTGGCTAGGTCTAGTAATTTGTTACAAAATAATCCTATCATAGTGAAGTTGATTCCTGCAATTGGCGTTATCATTTTTGCAATATGGGGTGTTGGTCCATTATTGTTCCAAACAAGGAAAATACTCTTCCAGAGGAGTGATAATAGTTGGAAGAAAAGTACCACTCACTATATAGTAACTTCTTACCTTCGGCCATTACTGTTATGGACTGGAGCAATACTTATTTGCAGAGCATTGGAGCCATTAATTCTACCTTCAGAACCTGGTCAGGTTGTTAAGGACCGGCTGCTGAATTTTGTGAGATCATTGTCAACGGTTTTGGCCTTCGCCTATTGTTTGTCAAGTGTAATTCAACAATCACAGAAATTCTTTGCGGAGGCTACTGATGCAAGTGAGACGAGAAATATGGGATTCCAATTTGCTGGCAAAGCTGTTTATTCTGCAGTATGGATAGCAGCCTTTTCATTGTTCATGGAATTATTAGGCTTCTCTACCCAGAAATGGGTTACTGCAGGAGGTCTTGGAACAGTTTTGCTGACCCTTGCTGGTCGTGAGATATTTACAAACTTCCTTTCAAGTGTGATGATTCATGCAACTCGGCCTTTTGTGGTTAATGAATGGATTCAAACAAAGATTGAAGGATATGAGGTTTCTGGTACTGTCGAGCATGTTGGCTGGTGGTCACCAACAATTATTAGAGGTGAAGATCGTGAAGCTGTTCACATTCCAAACCACAAATTTACAGTGAATGTTGTGCGGAATCTTAGTCAAAAAACACATTGGCGAATCAAAACTCATCTAGCCATTAGTCATTTGGATGTAAATAAGATTAATAACATTGTTGCTGACATGCGGAAGGTATTGGCCAAAAATCCTCAAGTTGAGCAGCAGAGACTGCACAGGAGAGTGTTTTTGGACAACATAAATCCTGAAAATCAGGCTCTTTTGATTCTGGTGTCTTGTTTTGTTAAGACCTCACATTTTGAAGAATATCTGTGTGTTAAGGAAGCAATACTGCTGGATCTTCTCAGAGTTATAGGCCATCACCGAGCCAGACTTGCAACTCCGGTCCGTACCCTGCAGAAAGTATACAGTGATGCTGACTTGGATAATATACCGTTTGCAGATTCCACATTTGGTGGTGGTCCAGTCACAGTACCTAACCGCCCATTATTAGTGATTGAACCATCTTACAAAATCAATGGAGATGATAAGATGAAAAGTCGATCTGCACGACCAGTTGTTGATCAAGATAATAAGACATCGAACCCTGATGCAAATGGAAACTCTAAGACACTTGTGACATCTAATTCTGACACAAATGGGAAGACAATTGTGACACCCAAACCCGATCCAGAAGTGGGTGAGAACAAGCCACTGAAAGTAGATTCAAACAAGGAAAACGTGGAGGTTCCAGAATCTTCTAAATCTAAAATATCTGGTTCGGTAGTAGAAAATTCAGCTCAGAAGGACATAGATTCCAAGCAATCCAAGGGTCAGACCACTAAAAACATAAAGCCAAATATTGAGTCTGAGAATGTAGTGCCGTCCTCATCTAACAGTGCTGACAAAACTGGTGGACTTAATGCTAATATAGCATCAAAACCGCAAGGAGAAAAGAAACCTGCTGCACAGCCTCAAGCATCCAGGACTGTTCTTGAAGAAAATATAGTACTAGGTGTTGCGTTGGAAGGATCAAAGAGGACCCTTCCCATTGATGAGGAGATTGACAATGTAACATCTCGAGAGGCAAAGGAAATGGCTGCATTCCAGGGTGGAAATGGACCTCCAAAGGCTCTAGATGGAAATGACTAG 2016 0.4201 MALPGSLQLSHGLGLCRNLGCNKHSRATGHGKLQLFRAGLSYSISLGSGSGSGQPNDLPAVKAAATVLARSSNLLQNNPIIVKLIPAIGVIIFAIWGVGPLLFQTRKILFQRSDNSWKKSTTHYIVTSYLRPLLLWTGAILICRALEPLILPSEPGQVVKDRLLNFVRSLSTVLAFAYCLSSVIQQSQKFFAEATDASETRNMGFQFAGKAVYSAVWIAAFSLFMELLGFSTQKWVTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHFEEYLCVKEAILLDLLRVIGHHRARLATPVRTLQKVYSDADLDNIPFADSTFGGGPVTVPNRPLLVIEPSYKINGDDKMKSRSARPVVDQDNKTSNPDANGNSKTLVTSNSDTNGKTIVTPKPDPEVGENKPLKVDSNKENVEVPESSKSKISGSVVENSAQKDIDSKQSKGQTTKNIKPNIESENVVPSSSNSADKTGGLNANIASKPQGEKKPAAQPQASRTVLEENIVLGVALEGSKRTLPIDEEIDNVTSREAKEMAAFQGGNGPPKALDGND 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03599 671 MobiDBLite consensus disorder prediction 482 512 - -
Vimu7g03599 671 MobiDBLite consensus disorder prediction 469 617 - -
Vimu7g03599 671 SUPERFAMILY Sm-like ribonucleoproteins 253 323 IPR010920 -
Vimu7g03599 671 Gene3D - 165 267 - -
Vimu7g03599 671 MobiDBLite consensus disorder prediction 521 540 - -
Vimu7g03599 671 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 43 654 IPR045042 -
Vimu7g03599 671 Pfam Mechanosensitive ion channel 210 416 IPR006685 GO:0016020|GO:0055085
Vimu7g03599 671 Gene3D - 269 324 IPR023408 -
Vimu7g03599 671 MobiDBLite consensus disorder prediction 541 599 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03599 Vimu-Chr7 30806171 30820818 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03599 9 663 Mechanosensitive Ion Channel Family AT5G10490 58.526 0.0 747
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03599 K22047 - gmx:100796304 1125.54