Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03593 ATGAGATTTTTCTCTCTCACACTGCTTACATTTTGGTCTATACTCTCTCTCTTTATACTGAAATCACTATGGTTTAGTCCAAACATGACTGTCTTTGCATCAGGAAATGAAACCGATCATTCTGCGTTGCTGAAGTTCAAGGAATCCATATCCAGTGATCCAACTAAAATCTTGTTTTCTTGGAATACTTCTACACACTTTTGTAACTGGCATGGAGTCACTTGCAATTCTATGCTTCAAAGAGTTACAGAGTTGAATTTGCAAGGATACAACTTGAAGGGATTCATATCTCCACACATAGGCAATCTGTCTCACATGACAAATTTCAACATTGGAGACAACAACTTCCACGGAGAAATCCCCCAAGAATTAGGTCAGTTGTCAAAACTGGAGTACCTTTCTGTTGGAAATAACTCATTCTTGGTAGGAAAATTTCCTTCAAACTTGACTGCTTGTACTCACCTCAAAATCTTGTACCTAAATGGCAACAATCTAACTGGTGAAATACCAGTGGAAATTGTCTCACTTCAAAAGCTTCAAAAACTGTTCCTTTTCAAGAACAATTTATCTGGAAGAATCCCATCCTTCATGGGGAATATTTCATCCTTAATCCATCTCTCCATAGGTTATAACAACTTTAAGGGAGATATTCCACAAGAAATTTGTCGTCTAAAAAGTTTGACATTTCTATCATTAAAATCGAACATATTGACCGGACCACTTCCTTCTTGTCTTTATAACATGTCATCTCTTACTCGAATCTCAGTGGCCATAAATCAACTTAACGGCTCTTTGCCATCCAACATGTTCCACACCCTCTCCAATCTCCAAACACTTCATATTGCCTTCAATCAATTCTCAGGATCAATCCCATCTTCCATAACCAATGCATCCATTCTTTCAACAATTGGTATGGCTCATAACAATCTTTTCGGGCAAGTTCCAAGTTTAGGCAAGCAGATACATCTTCAATATCTAGTTTTAAGTACAAACAATCTAGGTGACAATTCACCAAATGATCTGGAGTTTTTAAAATCATTGACAAACTGTAGCGAGTTGCAAATGTTGTCTTTGTCTTACAATAATTTTGGAGGTCGTTTGCCAAATTCTTTGGGCAATTTAACCACCCAACTTAGTAAATTGTATCTCGGGGGCAACCATATATCAGGAGGTATTCCAGCCACATGCGGAAATCTAATTAACTTAATTCTTTTTACAATGGAACAAAACCTCCTTGATGGAGTTATTCCGACAACTTTTGAGAAGCTACAGAAGTTGCAAGTGTTGGACTTAAGAGGAAACAAATTGTCAAGCTTAGGAACCTTCATAGGCAATCTCAGTCGACTGTTTTATTTGGACGTGGCAGAAAACATGTTAGCAGGAAGTATTCCTCCAAGTCTAGGAAGTTGCCAAGATTTGCAACATTTAGACCTTTCCCAGAACAACCTCACGGGAACCATACCATTGGAGGTTTTTAATCTTTCATATCTAGCGGATGCATTTTCATTGTCACAAAACTTGTTGACTGGTAATATACCAGAAGAAGTGGGCAACCTGAAAAATCTCAACTCGTTATATTTGTTTGAGAATCGTCTGTCTGGTCACATTCCAGAAACTATTGGAGAATGCATAATGTTGGAGCAACTCTATTTGCATGGGAATTCCTTACAAGGAAGCATCCCTTCTTCTTTGGCATCACTCAGAGGTCTTCAAAGTTTAGACCTCTCGCAGAACCTCTTGTCTGGACCAATTCCTAGAGTTCTGCAGATCATTTCTTCGTTGCAATATTTCAATGTATCATTTAACATGTTGGATGGTGAGGTTCCAACTAAAGGCATATTTAGTAATGCAAGTGGGATAATTGTGACTGGAAATAGTAAGCTTTGTGGAGGTATTTCAAAGCTGCATCTACCATTATGTCCTGTCAAAGCCACGAAACAAGCAAAACATCACTCCCTCAGATTGATAGCAATTATAGTAAGTGCAGTTGCTTCTCTTCTCATACTGTTGGTTATTCTAACAATCTACTGGATGAGGAAAAGGAGTAATAAGCCATCTTTGGATTCAACAACAACTGACCAACTGACTAAAGTTTCATACCAAAGCCTATACAATGGAACAAATGGGTTCTCAACTTCAAACTTGATCGGATCTGGAAGTTTTAGCTCTGTATATAAAGGAACTCTTGAGCAAGAAGACAAGATTGTTGCCATAAAGGTCCTAAACCTTAAAAAGAAAGGAGCTGACAAAAGTTTCATTGTTGAATGCAATGCGCTTAAAAATATTAGACATCGAAATCTGGTTCCGACTTTGACTTGTTGCTCTAGCATAGATTACAAAGGTGAAGAATTTAAAGCTCTAATTTTTGAGTATATGACAAATGGAAGTTTAGAACAATGGATTCATCCTGAGACACCAAGTGCAGGACATACGAGAACATTGAGCCTTCATCAACGATTAAACATCATAACTGATGTTGCTTCTGCATTGCATTATCTTCATCATGAGTGTGAACAATTGATCATTCACTGCGATATAAAACCAAGCAATGTCCTTCTTAATGATAGCATGGTTGCGCATGTGGGTGATTTTGGTATAGCAAGACTTTTGTCAACTTTCGATCACACCACTTCTGGGCAAACAAGTACAAATGGAATAAAGGGTACAATTGGCTATGCTCCTCCGGAGTATGGAGCGAGGTACGAGGTGTCAACTTATGGTGACGTTTATAGTTTTGGAATTCTTATACTGGAAATGCTCACTGGAAGAAGGCCTACAGATGAAATGTTTAAAGATGGTCAAAATCTTCGTAACTTTGTTGCAGTTTCATATCCTAATAATCTTTTGCAGATTTTGGACCGAAGAATCATTTCAGAGTATGAAGCAACTACAATGGAAGGAAAGTGTTGTAATGTTAATCCAGAGGCTGAAAAGTGTGTAGTTTCGCTTTTCAGAATTGGACTTGCTTGCTCTGTGGAATCACCAAAAGAAAGAATGAATTTGGTTGACGTTATCAGAGAGCTTAATCAAATCACCAAGGTTTCTTTACTGGTGAGCTAA 3060 0.3791 MRFFSLTLLTFWSILSLFILKSLWFSPNMTVFASGNETDHSALLKFKESISSDPTKILFSWNTSTHFCNWHGVTCNSMLQRVTELNLQGYNLKGFISPHIGNLSHMTNFNIGDNNFHGEIPQELGQLSKLEYLSVGNNSFLVGKFPSNLTACTHLKILYLNGNNLTGEIPVEIVSLQKLQKLFLFKNNLSGRIPSFMGNISSLIHLSIGYNNFKGDIPQEICRLKSLTFLSLKSNILTGPLPSCLYNMSSLTRISVAINQLNGSLPSNMFHTLSNLQTLHIAFNQFSGSIPSSITNASILSTIGMAHNNLFGQVPSLGKQIHLQYLVLSTNNLGDNSPNDLEFLKSLTNCSELQMLSLSYNNFGGRLPNSLGNLTTQLSKLYLGGNHISGGIPATCGNLINLILFTMEQNLLDGVIPTTFEKLQKLQVLDLRGNKLSSLGTFIGNLSRLFYLDVAENMLAGSIPPSLGSCQDLQHLDLSQNNLTGTIPLEVFNLSYLADAFSLSQNLLTGNIPEEVGNLKNLNSLYLFENRLSGHIPETIGECIMLEQLYLHGNSLQGSIPSSLASLRGLQSLDLSQNLLSGPIPRVLQIISSLQYFNVSFNMLDGEVPTKGIFSNASGIIVTGNSKLCGGISKLHLPLCPVKATKQAKHHSLRLIAIIVSAVASLLILLVILTIYWMRKRSNKPSLDSTTTDQLTKVSYQSLYNGTNGFSTSNLIGSGSFSSVYKGTLEQEDKIVAIKVLNLKKKGADKSFIVECNALKNIRHRNLVPTLTCCSSIDYKGEEFKALIFEYMTNGSLEQWIHPETPSAGHTRTLSLHQRLNIITDVASALHYLHHECEQLIIHCDIKPSNVLLNDSMVAHVGDFGIARLLSTFDHTTSGQTSTNGIKGTIGYAPPEYGARYEVSTYGDVYSFGILILEMLTGRRPTDEMFKDGQNLRNFVAVSYPNNLLQILDRRIISEYEATTMEGKCCNVNPEAEKCVVSLFRIGLACSVESPKERMNLVDVIRELNQITKVSLLVS 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03593 1019 Gene3D Ribonuclease Inhibitor 38 143 IPR032675 -
Vimu7g03593 1019 Gene3D Ribonuclease Inhibitor 144 202 IPR032675 -
Vimu7g03593 1019 ProSitePatterns Protein kinases ATP-binding region signature. 716 739 IPR017441 GO:0005524
Vimu7g03593 1019 ProSiteProfiles Leucine-rich repeat profile. 425 446 IPR001611 GO:0005515
Vimu7g03593 1019 PRINTS Leucine-rich repeat signature 567 580 - -
Vimu7g03593 1019 PRINTS Leucine-rich repeat signature 473 486 - -
Vimu7g03593 1019 ProSitePatterns Serine/Threonine protein kinases active-site signature. 841 853 IPR008271 GO:0004672|GO:0006468
Vimu7g03593 1019 SMART LRR_typ_2 471 494 IPR003591 -
Vimu7g03593 1019 SMART LRR_typ_2 446 470 IPR003591 -
Vimu7g03593 1019 SMART LRR_typ_2 248 272 IPR003591 -
Vimu7g03593 1019 SMART LRR_typ_2 273 297 IPR003591 -
Vimu7g03593 1019 SMART LRR_typ_2 152 176 IPR003591 -
Vimu7g03593 1019 SMART LRR_typ_2 519 543 IPR003591 -
Vimu7g03593 1019 SMART LRR_typ_2 567 590 IPR003591 -
Vimu7g03593 1019 SMART LRR_typ_2 423 444 IPR003591 -
Vimu7g03593 1019 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 76 343 - -
Vimu7g03593 1019 ProSiteProfiles Protein kinase domain profile. 710 1012 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g03593 1019 PANTHER OS04G0122200 PROTEIN 223 1012 - -
Vimu7g03593 1019 FunFam LRR receptor-like serine/threonine-protein kinase EFR 344 646 - -
Vimu7g03593 1019 Gene3D Ribonuclease Inhibitor 351 640 IPR032675 -
Vimu7g03593 1019 Gene3D Ribonuclease Inhibitor 204 349 IPR032675 -
Vimu7g03593 1019 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 792 1017 - -
Vimu7g03593 1019 SMART serkin_6 710 984 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g03593 1019 SUPERFAMILY L domain-like 36 333 - -
Vimu7g03593 1019 Gene3D Phosphorylase Kinase; domain 1 673 791 - -
Vimu7g03593 1019 Pfam Leucine rich repeat 546 604 IPR001611 GO:0005515
Vimu7g03593 1019 Pfam Leucine rich repeat 377 436 IPR001611 GO:0005515
Vimu7g03593 1019 Pfam Leucine Rich Repeat 473 488 IPR001611 GO:0005515
Vimu7g03593 1019 Pfam Protein kinase domain 712 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g03593 1019 FunFam LRR receptor-like serine/threonine-protein kinase EFR 681 791 - -
Vimu7g03593 1019 Pfam Leucine rich repeat N-terminal domain 37 76 IPR013210 -
Vimu7g03593 1019 SUPERFAMILY Protein kinase-like (PK-like) 683 1008 IPR011009 -
Vimu7g03593 1019 Gene3D Transferase(Phosphotransferase) domain 1 792 1016 - -
Vimu7g03593 1019 SUPERFAMILY L domain-like 376 630 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03593 Vimu-Chr7 30732691 30735868 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03593 36 1013 Receptor kinase-like Gene Family AT3G47570 45.051 0.0 828
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vimu7g03593 Pkinase 2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03593 - - gmx:100801459 1352.42