Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03591 ATGGATGCAATCCAAACAGAGAAAGTTTATGTTGCTGTTGGTAATGATGCACAGGATGGATTTAAGGCTTTGAATTGGACTCTAAAGAAATGGAATTCTCATCCAATTTCCGTTGTTATTCTCCATGTCACACACAATACTCCCATGGATTATGTCTATACACCATTTGGGAAACTTCCAGCAAGATCTGTGAGTGAGGAGAAACTACAAATTCTCAGGAAAGATGAGCAAGAGAAAATCAACAAGCTGTTTTCCAAGTATGTTGCTTTCTGTGGCAAGGTGCCAGCAGAGATTCTTCAAGTTGAGAAATCTGATGAACCAATGCAAAAGCGAGTCATAGACTTGATCTTTGGTCTAGGAATAACCAAATTGGTGATGGGATTTTCATTCATGAAGCCCTCCATGAAATCTAAAGGTGCTATTAGTGGATTGTTCTATGTTCATCAGCACAAGCCTTCCTTCTGCGAACTGTTCATTATTTGTGGGGGGAAGCAAATTTTCCTGAGAGGTAAAAATGATGAGAAAATCATGGAGGATGATCATGGAGTCATGGTTGCGAGAATAAGAGATAAGATAACCTTCAAAGATTGGTTAGACAAATGGTTCAATGACAAAACCCAGGATTCTCCGGATAAAAGTGAATCACTTTCCTCAAGCAATTTAGAATCCCCGGTGACCAGAAACCAGTGGGAAATTTACCTGCAGGAAATTGAAAATTATTATCAAGAATTGTTGTCTTCCAAGTTGGAGGAAGGAAACTGCGGGCTAGATAATGACGACTCACAGATTGGTCCAAACGAGCCACATGTCACTGAACAAAACAATTATAATATGAGTGGTGCAGAGAAAATTGAAGTCCTGAAAAGTCAGCTGAATGAAGCTCAGAAGACCATTCTATTGAAGAGGAAAGAGGCCAAAGATAGTAAAGAAAGGCATGCAAAAGCTGAATGGGCAATTTGTCTATGCAACAGTCGGGCTGAAGAGGTGGAAGGTCGAATTCGAGAAGAGGTGAGTGCTAAGGAGGAGCTAAAGAAGGAATGGGAAGCGGAGAGAGAGCAGACGGAGGAGATGAGAATGGAGGTGGAAGAGAGGAGGAGGAGGCTCAGTTCCCTGACGGAGGTGCAATCGGAGCTCTCCAACAGGCTTCAAATATGGACGCTGGCCAAGACGCGGGCGGAGACGCAGCTCGAGAGGGCGGTAAGGGAGAGAACGGAGATGGTGAGGGAGATCGAGGAGCTCAGGCGCCAGAGAGACGTGCTTAACCGAAGGATCGAGTTCTGCAAGCAGAAGGACGCAATTGGAATGGCGGCTAGGATCGCCGACACGCGCTGCACATTCCGCGAGTACACGGCGGAGGAGATACGGTTGGCCACCGACAACTTCTCCGAGCGGCTGAGGTTGAAGTCCGGTGGAGATTGGAGCAATGTTTACCGGGGACGCTTCAACCACTCCACTGTTGCCATCAAGATGCTCCCTTCTTTCTCCCTCCAACATTTCCAATCCAAGGTGAGGCTTCTTGGTGATATTAGGCATCCTCATCTGATTGCCATGGCGGGGTTTTGCTCCGAGCCGAAATGCATAGTTTTGGAATACATGCGCCACGGAAGCTTAAGAGACATGCTGTTTTCTAGGAGAAAAAACCGCGTTTTAAGATGGTACGACCGAATACGAATTGCCACAGAAGTTTGTTCAGGCCTGGGCTTTCTCAATGGAGCTGAACCAAGGCCCGTCATTCACTGCCATTTGACCCCATCCACAGTCCTCCTAGACCGCAATTTGGTGGCAAAGATCACGGGCTTTGGGCTCCACGATTGCCGTGACGAACAGTGTAACGTAGAGTCAGATTTGCAGGCTATAGGGGTTTTGTTGATGCATCTTTTAACAGGAAGAAATTGGGCCGGGCTGGTTGAGGAGGTGATGACTGTGGATATGGACAGAGAGGCTTTGGCTAGCGTTCTTGATGAGATGGCTGGGCAATGGCCATTGGATCTAGCAATAGAACTTGCAGGCCTGGCTTTGATGTGCGTGTCCACCAAAAGCAAGAATAACAGCTCAGAACTGAGCATTGCAAAGGTCTTGGAGGAACTGAATGAGATAAGAAGAAAGGGGGATGAAATAGTTGGAAGGGAAGGACGAAAGGCAATTATTGGTGGGTGTGTAGATAGAGAGGGAACCAGTGATGTGCCTAGTGTTTTTCTTTGCCCCATACTTCAGGAGGTAATGAAAAACCCACACTTGGCAGCAGATGGGTTTTCTTATGAGCTTGAAGCAATAGACCACTGGCTGCAATCGGGGCGTGACACATCACCAATGACAAATCTGAGGCTGAAACACACATTCCTCACCCCGAATCACACTCTCCGTTCCCTAATTGAGGATTGGCAGACCAATAAACCACCTAAACTTACACACTAA 2415 0.465 MDAIQTEKVYVAVGNDAQDGFKALNWTLKKWNSHPISVVILHVTHNTPMDYVYTPFGKLPARSVSEEKLQILRKDEQEKINKLFSKYVAFCGKVPAEILQVEKSDEPMQKRVIDLIFGLGITKLVMGFSFMKPSMKSKGAISGLFYVHQHKPSFCELFIICGGKQIFLRGKNDEKIMEDDHGVMVARIRDKITFKDWLDKWFNDKTQDSPDKSESLSSSNLESPVTRNQWEIYLQEIENYYQELLSSKLEEGNCGLDNDDSQIGPNEPHVTEQNNYNMSGAEKIEVLKSQLNEAQKTILLKRKEAKDSKERHAKAEWAICLCNSRAEEVEGRIREEVSAKEELKKEWEAEREQTEEMRMEVEERRRRLSSLTEVQSELSNRLQIWTLAKTRAETQLERAVRERTEMVREIEELRRQRDVLNRRIEFCKQKDAIGMAARIADTRCTFREYTAEEIRLATDNFSERLRLKSGGDWSNVYRGRFNHSTVAIKMLPSFSLQHFQSKVRLLGDIRHPHLIAMAGFCSEPKCIVLEYMRHGSLRDMLFSRRKNRVLRWYDRIRIATEVCSGLGFLNGAEPRPVIHCHLTPSTVLLDRNLVAKITGFGLHDCRDEQCNVESDLQAIGVLLMHLLTGRNWAGLVEEVMTVDMDREALASVLDEMAGQWPLDLAIELAGLALMCVSTKSKNNSSELSIAKVLEELNEIRRKGDEIVGREGRKAIIGGCVDREGTSDVPSVFLCPILQEVMKNPHLAADGFSYELEAIDHWLQSGRDTSPMTNLRLKHTFLTPNHTLRSLIEDWQTNKPPKLTH 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03591 804 Coils Coil 389 430 - -
Vimu7g03591 804 Gene3D Transferase(Phosphotransferase) domain 1 534 708 - -
Vimu7g03591 804 PANTHER OS02G0152300 PROTEIN 9 792 - -
Vimu7g03591 804 SMART Ubox_2 731 794 IPR003613 GO:0004842|GO:0016567
Vimu7g03591 804 SUPERFAMILY RING/U-box 725 798 - -
Vimu7g03591 804 ProSiteProfiles U-box domain profile. 727 801 IPR003613 GO:0004842|GO:0016567
Vimu7g03591 804 CDD RING-Ubox_WDSUB1-like 729 784 - -
Vimu7g03591 804 Gene3D Phosphorylase Kinase; domain 1 435 531 - -
Vimu7g03591 804 Coils Coil 682 702 - -
Vimu7g03591 804 ProSiteProfiles Protein kinase domain profile. 462 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g03591 804 Pfam U-box domain 728 797 IPR003613 GO:0004842|GO:0016567
Vimu7g03591 804 Coils Coil 326 371 - -
Vimu7g03591 804 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 726 801 IPR013083 -
Vimu7g03591 804 SUPERFAMILY Protein kinase-like (PK-like) 445 677 IPR011009 -
Vimu7g03591 804 Coils Coil 284 311 - -
Vimu7g03591 804 Pfam Protein tyrosine and serine/threonine kinase 471 606 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03591 Vimu-Chr7 30713593 30717820 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03591 7 803 U-box Gene Family AT5G65500 49.134 0.0 760
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vimu7g03591 PK_Tyr_Ser-Thr 7.2e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03591 - - gmx:100786771 1347.8