Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03589 ATGGCATTAGCGCATAGTAACGCGAAAGAGTTTATGAGCGATGGCGACGGATCTCCTAGGGCGATTCTGGAAACCCCTGTTTCGGAAACAGAGTCCGAGACAGATTCGTCGATGGAAAGCGGAAAAGAGGGTTACATGATGCCATGGAAGTCTATGGTTGACGTTTTCAAGTTCAAGTCTGTGCGAAAATTAACTTCCATTCCTTTGCTTTCGGTGAGCCATGATATCTCTCGGAAGGGTTTGACCAAAAAACTGGCTCGTATTCGAAGTGCGGAAGACGGTATCGATATTGGAGATATTCCCGCGAAACCCTCTTGGAGAAACTTTGATTATGAAGAGTTAGCAGCTGCTACTAAAAATTTCAGTGCTGAGAACTTGGTTGGGAAAGGTGGTCATGCTGAAGTGTACAAAGGGTGCTTACCTGATGGTCAAATTATAGCTGTAAAGAGGCTAATGAAGAATGAAAAGGACGCTGCAGATAGAGCTGGAGATTTTTTGACAGAGCTTGGGATTATTGCACACATAAACCACACAAATGCAACACACCTTGTTGGGTTTGGGGTTGATGGCGGCCTCTTCTTTGTCCTGCAATTAGCTGCGCATGGAAGTCTCAGTTCTTTGCTTTTTGGTTCTGAAGGCATGGACTGGGAAAAACGATTCAAGGTAGCTGTTGGAGTGGCTGAGGGATTGCATTATCTCCACAAAGAGTGTCCAAGGCGAATCATTCATAGGGACATCAAGGCCTCCAACATCCTACTAAACGAAAACTACGAAGCTGAGATTTCAGATTTTGGACTGGCAAAATGGCTTCCAAACAAGTGGGCCAACCATGTTGTCTTCCCAATAGAAGGCACATTTGGGTATTTGGCTCCGGAGTATTTTATGCATGGAATTGTGGATGAGAGAACTGATGTATTTGCATTTGGAGTTTTGCTGTTGGAGCTCATAACTGGCCGTCGTGCAGTTGATTCAGATAGTAGGCAAAGTCTTGTGACTTGGGCGAAGCCACTGTTAGACACAAACAATGTAAAGGGCATAGCAGACCCCAGATTAGGAGAGGCGTATGACCGTACAGAAATGATACGTGTGATGGTGACAGCTTCCATGTGTGTCCACCATGCATCCTCCAAAAGGCCATTCATGAACAAGGTTGTGCAGCTGCTAAAGGGTGAAGAGGCAATTATAGACATTAAGCAGAATTCAATTGAACCAAAATCTCAATTGTTAGAGGCATGTGACCTAGAAGATTATACTTGCTCAAGTTACCTGAAGGACATGAGTCGCCACATGCAACTGATCATGGAGTGA 1308 0.4472 MALAHSNAKEFMSDGDGSPRAILETPVSETESETDSSMESGKEGYMMPWKSMVDVFKFKSVRKLTSIPLLSVSHDISRKGLTKKLARIRSAEDGIDIGDIPAKPSWRNFDYEELAAATKNFSAENLVGKGGHAEVYKGCLPDGQIIAVKRLMKNEKDAADRAGDFLTELGIIAHINHTNATHLVGFGVDGGLFFVLQLAAHGSLSSLLFGSEGMDWEKRFKVAVGVAEGLHYLHKECPRRIIHRDIKASNILLNENYEAEISDFGLAKWLPNKWANHVVFPIEGTFGYLAPEYFMHGIVDERTDVFAFGVLLLELITGRRAVDSDSRQSLVTWAKPLLDTNNVKGIADPRLGEAYDRTEMIRVMVTASMCVHHASSKRPFMNKVVQLLKGEEAIIDIKQNSIEPKSQLLEACDLEDYTCSSYLKDMSRHMQLIME 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03589 435 Gene3D Phosphorylase Kinase; domain 1 99 196 - -
Vimu7g03589 435 MobiDBLite consensus disorder prediction 1 43 - -
Vimu7g03589 435 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 96 198 - -
Vimu7g03589 435 SUPERFAMILY Protein kinase-like (PK-like) 105 390 IPR011009 -
Vimu7g03589 435 SMART serkin_6 121 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g03589 435 PANTHER OS08G0249100 PROTEIN 28 412 IPR046958 -
Vimu7g03589 435 ProSiteProfiles Protein kinase domain profile. 121 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g03589 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Vimu7g03589 435 ProSitePatterns Protein kinases ATP-binding region signature. 127 149 IPR017441 GO:0005524
Vimu7g03589 435 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 200 402 - -
Vimu7g03589 435 Pfam Protein kinase domain 123 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g03589 435 Gene3D Transferase(Phosphotransferase) domain 1 200 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03589 Vimu-Chr7 30668289 30672121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03589 109 384 Trihelix Transcription Factor Family AT1G68690 45.263 7.12e-72 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vimu7g03589 Pkinase 1.2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03589 - - gmx:100818314 676.011