Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03575 ATGTCGAACGTTTTAGCAGGCAGTGAAAACGGAGAAGTTTCTGCATATGGGTGGGCAGCTAGAGACGATTCCGGAATTCTCTCCCCATTCCACTTTACCAGAAGGACAAACGGTGATAATGATATCACACTTGAAATACTCTACTGTGGGATTTGCCACACGGACCTCCACTTCGCGAGGAACGACTTTGGGATGTCGATCTATCCAATGGTTCCTGGGCATGAGATTGTGGGGAAAGTGACAAAGGTGGGTAGCAAAGTCACAAAATACAGTGTTGGAGACATAGCTGGTGTGGGTGGCTCTGTGGGTTCGTGTGGCTCATGTTCGGAGTGCAGCGAAGGCTTCTATGTGTATTGTCCAAAGATGATTTTAACCTACAGTGCACGCTGCCATGATGGAACAGTAACCCAAGGTGGATACTCTGATAATCTGGTGGTTGATCAGAACTTTGCGGTGCTAATCCCAAAGTCCATGCCACTGGCTAGTACAGCCCCCTTGTTGTGTGCTGGAATCACAGTTTACAGCCCGTTGAAGCATCACGGGCTTACTGAGCCCGGGTTGCACTTGGGTGTGGTGGGCCTGGGAGGCCTAGGTCACGTGGCTGTGAAGTTTGCTAAGGCTTTTGGCATGCGTGTCACTGTGATAAGTACATCTCCCAGCAAGAAAAAGGAAGCATTGGAGAGGTTTGGTGCAGATGCATTCTTGGTTAGTCGAGACCAACAACAGTTGCAGGATGCCATGGGAACCATGGACGCCATTATCGACACTGTTTCAGCTAATCACTCCATCCAACCACTGATTGGTTTATTGAAAACAAGAGGAAAGTTGATTTTGTTGGGTGGACCAGCCAAACCTCTTGAGGTTTTAGCTATGCCTTTGCTTTTGGGGAGAAAGATGATTGCTGGAAGTGCAGGAGGTGGGAGAGAAGAGATTCAAGAGATGATTAATTTTGCAGCAAAACACAATATTACAGCAGATGTGGAAGTCATTTCAATGGAGTACGTGAACACTGCTTTGGAGAGACTAGAAAAGAACGATGTTAAATATCGCTTTGTCATTGATGTGGCAAACACGATATAA 1080 0.4685 MSNVLAGSENGEVSAYGWAARDDSGILSPFHFTRRTNGDNDITLEILYCGICHTDLHFARNDFGMSIYPMVPGHEIVGKVTKVGSKVTKYSVGDIAGVGGSVGSCGSCSECSEGFYVYCPKMILTYSARCHDGTVTQGGYSDNLVVDQNFAVLIPKSMPLASTAPLLCAGITVYSPLKHHGLTEPGLHLGVVGLGGLGHVAVKFAKAFGMRVTVISTSPSKKKEALERFGADAFLVSRDQQQLQDAMGTMDAIIDTVSANHSIQPLIGLLKTRGKLILLGGPAKPLEVLAMPLLLGRKMIAGSAGGGREEIQEMINFAAKHNITADVEVISMEYVNTALERLEKNDVKYRFVIDVANTI 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03575 359 Gene3D - 169 325 - -
Vimu7g03575 359 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 158 323 IPR036291 -
Vimu7g03575 359 SMART PKS_ER_names_mod 25 353 IPR020843 GO:0016491
Vimu7g03575 359 FunFam Putative cinnamyl alcohol dehydrogenase 6 326 355 - -
Vimu7g03575 359 Gene3D - 18 355 - -
Vimu7g03575 359 SUPERFAMILY GroES-like 22 186 IPR011032 -
Vimu7g03575 359 CDD CAD1 17 354 IPR047109 GO:0016616
Vimu7g03575 359 FunFam Cinnamyl alcohol dehydrogenase 169 325 - -
Vimu7g03575 359 Pfam Alcohol dehydrogenase GroES-like domain 40 152 IPR013154 -
Vimu7g03575 359 Pfam Zinc-binding dehydrogenase 196 319 IPR013149 -
Vimu7g03575 359 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 73 87 IPR002328 GO:0008270|GO:0016491
Vimu7g03575 359 PANTHER ALDEHYDE REDUCTASE 13 358 IPR047109 GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03575 Vimu-Chr7 30455666 30457175 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03575 14 359 Monolignol Biosynthesis Gene Families AT4G37990 63.873 6.86e-155 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03575 K23232 - gmx:100801089 570.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03575 7 30455666 30457175 Vimu7g03575 7 30455666 30457175 ECH
Vimu7g03575 7 30455666 30457175 Vimu7g03575 7 30455666 30457175 PCT