Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03573 ATGATGGTGGAAACTAATATGAGGAGACAAGTTCCGATCCAACGGTGGTTTAGAATGGCTTTGCTTCTCAGCTTAATCTTTTCCGGTGCCTGCTCTGACACTTCTGAGAGTGTCTCGTTTAGAAGAGGTTTGAAGACTACTCCTGCTGCTGTACAGCTGAATAAAGATGAAGACCAGGTAGTGATTGAAAACGGCATAGTTTCCCTCAATTTGTCAAATCCCGAAGGCTATATTATTGGATTATATTATGACGGAACTCAAAATATACTTAATAAAAAAAACGAAGAATTTGATAGAGGGTACTTGGACGTTGTTTGGAACGAAAATGGAAAACCTGGGATCTTTGAGAGAATCAATGGGGCAAATTTCTCAGTAATTGAAGCAAGTGATACTGTGGTGGAGGTTTCCTTTTTAAAAACATGGACTGCTTCCATGAAAGGCTCAAGTGTCCCCATAAACATAGACTTAAGGTATATATTGCGAAGAGGTGATTCTGGGTTTTATTCATACGCAATATTTACTCGTCCACCAGGATTACCTGCAGTCACGGTTTATCAAATTAGAATTGTTTACAAACTCGACGAAGACAGGTTCCACTATATGGCCATATCTGATACAAGACAAAGGAAGATGCCAACTGTAGAAGACAGAAGCACGGGCAAGGTGCTTGCGTATCCTGAAGCTGTTCTCTTAACCCATGCAACTGACCCACAAATTCGAGGAGAGGTTGATGATAAATATCAATACTCGACAGAGAACAAAGATAACTCTGTTCATGGGTGGATTGCAGAGGATGATTCGGCACCAGTGGGTTTCTGGGTGATAACACCCACTAATGAGTTCCGCAATGGTGGGCCCGTTAAACAAGAACTCACTTCTCATGTTGGCCCAATTTCTCTTTCCATGTTTACTAGCACTCATTATGCTGGCAAGAAGGTAATCATAGAATTTGATGAAGGGGAGACTTATAAAAAGGTTTTTGGGCCAACTTTTGTTTACCTTAACTCTGCTCCAAGCAAAACTCAGTTCAAGTCTCTGTGGTCAGATGCTGTAGATCAGTTATCCAATGAAGAAAGAAAATGGCCTTATGATTTCATCGGATCAAAAGATTTTATTCCACCCAGCCAACGGGGAATGGTGTCAGGAAAACTTCAAGTTAAAGATGGGAGTGGGACGGCTCAACCAGCTAAAAGTTCTTACGTTGGTCTAGCTTTACCTGGAGACGCAGGATCGTGGCAAATAGAAAGCAAGGGTTATCAATTCTGGACTCAAACTGATAAAGATGGAAGCTTCTCAATTACAAATATTGTACCTGGGAAGTACACCTTGTATGCATGGGTCCCTGGTTTCATAGGAAATTACAAATATCAAATTAATGTTGTTATCACACCGGGTAACATATCTTCTTCTCTCAAATGTTATGATACCCAGATAAATTATAACTTGTATGTAAAATTTTCTGTAGGAGACAACGTCAACTTGGGTTCACTTGTTTACAAACCTCCAAGAAATGGTCCTACTTTATGGGATATTGGGATACCAGATAGGTCAGCTGCAGAGTTCTATGTACCAGACGTTTACCCAGAGCTTGTGAACAAATTGTACCAAAAGGATAGCAAAAATGGGTTTAGGCAATACGGCTTGTGGGAACGTTACACTGATTTATATCCAACAAAAGATCTTATTTTCACAGTCGGTGTTTCTGACTATCATAAGGACTGGTTTTATGCTCAAGTTACAAGAAGCACAAAAACGAGTAAATTCATGCCAACCACTTGGCAGATTCAATTCCAGCTTGAGAATATCATAAAGGGAAACTACACACTGCAATTGGCCTTGGCATCTGCCACTAATTCTAAATTGGAGGTTAGTTTCAACAAGCCGAATTCAAACCCTCCATACTTCACAACAGAAGAGCTAATTGGCGATGACAATGCCATAGCAAGGCACGGCATCCATGGATTGTATGAGTTGTATAGTGTAGGTGTAGATAGTAATCAATTGGTAAAAGGAAAAAACACCATCTATTTGACACAGTCAAATGCCAAAACTCCATTTGAAGGAATTATGTATGATTATATTCGTTTGGAAAGTCCTACAACTATAAAATAA 2112 0.3977 MMVETNMRRQVPIQRWFRMALLLSLIFSGACSDTSESVSFRRGLKTTPAAVQLNKDEDQVVIENGIVSLNLSNPEGYIIGLYYDGTQNILNKKNEEFDRGYLDVVWNENGKPGIFERINGANFSVIEASDTVVEVSFLKTWTASMKGSSVPINIDLRYILRRGDSGFYSYAIFTRPPGLPAVTVYQIRIVYKLDEDRFHYMAISDTRQRKMPTVEDRSTGKVLAYPEAVLLTHATDPQIRGEVDDKYQYSTENKDNSVHGWIAEDDSAPVGFWVITPTNEFRNGGPVKQELTSHVGPISLSMFTSTHYAGKKVIIEFDEGETYKKVFGPTFVYLNSAPSKTQFKSLWSDAVDQLSNEERKWPYDFIGSKDFIPPSQRGMVSGKLQVKDGSGTAQPAKSSYVGLALPGDAGSWQIESKGYQFWTQTDKDGSFSITNIVPGKYTLYAWVPGFIGNYKYQINVVITPGNISSSLKCYDTQINYNLYVKFSVGDNVNLGSLVYKPPRNGPTLWDIGIPDRSAAEFYVPDVYPELVNKLYQKDSKNGFRQYGLWERYTDLYPTKDLIFTVGVSDYHKDWFYAQVTRSTKTSKFMPTTWQIQFQLENIIKGNYTLQLALASATNSKLEVSFNKPNSNPPYFTTEELIGDDNAIARHGIHGLYELYSVGVDSNQLVKGKNTIYLTQSNAKTPFEGIMYDYIRLESPTTIK 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03573 703 CDD RGL4_M 376 465 IPR029413 -
Vimu7g03573 703 SUPERFAMILY Starch-binding domain-like 373 467 IPR013784 GO:0030246
Vimu7g03573 703 SUPERFAMILY Galactose mutarotase-like 53 338 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vimu7g03573 703 Pfam Rhamnogalacturonate lyase family 45 243 IPR010325 -
Vimu7g03573 703 Pfam Polysaccharide lyase family 4, domain II 397 466 IPR029413 -
Vimu7g03573 703 Gene3D - 50 345 IPR014718 GO:0030246
Vimu7g03573 703 Pfam Polysaccharide lyase family 4, domain III 507 696 IPR029411 -
Vimu7g03573 703 Gene3D - 372 471 - -
Vimu7g03573 703 SUPERFAMILY Galactose-binding domain-like 504 697 IPR008979 -
Vimu7g03573 703 Gene3D - 505 697 - -
Vimu7g03573 703 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 54 700 - -
Vimu7g03573 703 CDD RGL4_N 59 342 - -
Vimu7g03573 703 CDD RGL4_C 509 697 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03573 Vimu-Chr7 30427988 30434310 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03573 51 700 Polysaccharide Lyase AT1G09890 51.067 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03573 K18195 - gmx:100781089 977.622