Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03571 ATGATGATGAAAACTCATACGAGGAAACGAGTTCTGCTCCAATGGTGGTTTAGAATGGCTTTGCTTCTCAGCTTAATCTTTTTTGGTTCCTGCTCTCGAACTTCTGAAACTCTCTCGTTTAGAAGAAGTTTGAAAACTACTCCTGCTCCTGTCAAGCTGAATAAAAATGAACACCAGGTACTGATTGGAAACGGCATAGTTTCCCTCAATTTGTCAAACCCCGGAGGCTATATTATTGGACTATACAATGAAGGAACTCAGAATATACTTAGTCAAAAAAACGAAGAATTTGATAGAGGGTACTTGGACGTTGTTTGGAACGAAGATGGAAAGCCTGGGATCTTTGAGAGAATCAAAGGGACAAATTTCTCAGTAATTGAAGCAAGTGATACTATGGTGGAGGTTTCCTTTTTAAAAACATGGGATGCTTCCATGCAAGGCTCGAGTGTCCCCATAAACATAGACTTAAGGTATATATTGCGAAGTGGTGATTCTGGGTTTTATTCATACGCAATATTTACTCGTCCACCAGGATTACCTGCAGTCACGGTTTATCAAATTAGAATTGTTTACAAACTCGACGAAGACAGGTTCCACTATATGGCCATATCTGATACAAGGCAAAGGAAGATGCCAACTGCAGAAGACAGAAGAACGGGCAAGGTGCTGGCGTATCCTGAAGCTGTTCTCTTAACCCATGCAACTGACCCACAAATTCGAGGAGAGGTTGATGATAAATATCAATACTCGACAGAGAACAAAGATAACTCTGTTCATGGGTGGATTGCAGAGGATGATTCGGCACCAGTGGGTTTCTGGGTGATAACACCCACTAATGAGTTCCGCAATGGTGGGCCCGTTAAACAAGAACTCACTTCTCATGTTGGCTCAACTTCTCTTTCCATGTTTACCAGCACTCATTATGCTGGCAAGGAGGCAGTCATTGCATTTGATGAAGGGGAGACTTATAAAAAGGTTTTTGGGCCAATTTTTGTTTACCTTAACTCTGCTCCAACCAAAACTCAGTTTAAGTCTCTGTGGTCAGATGCCGTAACACAGTTATCCAATGAAGAAAAAAAATGGCCTTATGATTTCATCGGATCAAAAGATTTCATTCCACCCAGTCAACGGGGAAAGGTGTCAGGAAAGCTTCAAGTTAAAGATGGGGGAGGGACGGCTCAACCAGCTAAAAGTTCTTACGTTGGTCTAGCTTTACCTGGAGATGCAGGATCATGGCAAATAGAAAGCAAGGGTTATCAATTCTGGACTCAAACCGACAACGATGGAAGCTTCTCAATTACAAATATTGTACCTGGGATTTACACCTTGTATGCATGGGTCCCTGGTTTCATTGGAAATTATAAATATGAAGATAATGTTGATATCAAACCAGGAGGCGACATCAACTTGGGTTCACTTGTATACAATCCTCCAAGAAATGGTCCTACGTTATGGGAAATTGGGATCCCAGATAGGTCAGCTGCAGAGTTCCATGTACCAGACCTTTACCCTGAGCTTGTGAACAAATTGTACCTAAAGGATAGCAAAAATGGGTTTAGGCAATACGGCTTGTGGAGACGTTATACTGATTTATATCCAACAGAAGATCTTATTTTCACAGTCGATGTTTCTGACTATCATAAGGACTGGTTTTATGCTCAAGTTACCAGGAGCACAAATACGAGCAAATTCATTCCAACCACTTGGCAAATTCAATTCCAGCTTGAGAATATCATAAAAGGAGCAAACTACACACTGCAATTGGCCTTGGCATCTGCCACTAATTCTAGATTAGAGGTTAGGTTCAACAAGCCGAATTCAAACCCTCCATACTTCACAACAGAAAAGCTAATTGGCAATGACAATGCCATAGCAAGGCACGGCATCCATGGATTATATGAGTTGTATAGTGTAGGTGTAGATAGCAATCAATTGCATGTTCCTTGGCTCTGGAGTCTGTGCTGTTGGAAAACTGGACCTTTTCCTCGCAAGGTGGGTTTTGCTGGTTATGCCGCTCTCTCTCTCTCTCTCCCAATGTCGCAGACACATTCTCTTTCCCATTCAAGATGA 2070 0.4184 MMMKTHTRKRVLLQWWFRMALLLSLIFFGSCSRTSETLSFRRSLKTTPAPVKLNKNEHQVLIGNGIVSLNLSNPGGYIIGLYNEGTQNILSQKNEEFDRGYLDVVWNEDGKPGIFERIKGTNFSVIEASDTMVEVSFLKTWDASMQGSSVPINIDLRYILRSGDSGFYSYAIFTRPPGLPAVTVYQIRIVYKLDEDRFHYMAISDTRQRKMPTAEDRRTGKVLAYPEAVLLTHATDPQIRGEVDDKYQYSTENKDNSVHGWIAEDDSAPVGFWVITPTNEFRNGGPVKQELTSHVGSTSLSMFTSTHYAGKEAVIAFDEGETYKKVFGPIFVYLNSAPTKTQFKSLWSDAVTQLSNEEKKWPYDFIGSKDFIPPSQRGKVSGKLQVKDGGGTAQPAKSSYVGLALPGDAGSWQIESKGYQFWTQTDNDGSFSITNIVPGIYTLYAWVPGFIGNYKYEDNVDIKPGGDINLGSLVYNPPRNGPTLWEIGIPDRSAAEFHVPDLYPELVNKLYLKDSKNGFRQYGLWRRYTDLYPTEDLIFTVDVSDYHKDWFYAQVTRSTNTSKFIPTTWQIQFQLENIIKGANYTLQLALASATNSRLEVRFNKPNSNPPYFTTEKLIGNDNAIARHGIHGLYELYSVGVDSNQLHVPWLWSLCCWKTGPFPRKVGFAGYAALSLSLPMSQTHSLSHSR 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03571 689 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 31 - -
Vimu7g03571 689 Pfam Polysaccharide lyase family 4, domain II 397 469 IPR029413 -
Vimu7g03571 689 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 54 646 - -
Vimu7g03571 689 CDD RGL4_M 376 473 IPR029413 -
Vimu7g03571 689 SUPERFAMILY Galactose mutarotase-like 57 338 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vimu7g03571 689 Pfam Rhamnogalacturonate lyase family 48 243 IPR010325 -
Vimu7g03571 689 SUPERFAMILY Starch-binding domain-like 373 471 IPR013784 GO:0030246
Vimu7g03571 689 CDD RGL4_C 485 645 - -
Vimu7g03571 689 Gene3D - 51 349 IPR014718 GO:0030246
Vimu7g03571 689 Gene3D - 372 471 - -
Vimu7g03571 689 Pfam Polysaccharide lyase family 4, domain III 483 646 IPR029411 -
Vimu7g03571 689 CDD RGL4_N 59 342 - -
Vimu7g03571 689 Gene3D - 481 649 - -
Vimu7g03571 689 SUPERFAMILY Galactose-binding domain-like 480 646 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03571 Vimu-Chr7 30396049 30403330 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03571 47 647 Polysaccharide Lyase AT1G09880 51.780 0.0 629
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03571 K18195 - gmx:100781089 942.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03571 7 30396049 30403330 Vimu7g03571 7 30396049 30403330 PCT