Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03570 TTATCACAAAAGATGAAAGAATTTTGCAGCCACTGGTGGTTTAAACTGGCTCTGAAGCTCAGCTTACTCTTGCTCGGTGCCTCTTCTCAAATGTATGATCTTCACATTGATTGCTTCCACTTGCAAAGACCTTCAACCGTCGTCAACAACCTAGCAGCGAGGCGTCCACATTCTCCGGTCAAGCTGAATACTGAAAATCCTCACCAGGTGGTGATTGGCAACGGCGTCGTTTCTTTCAACTTGTCAAAACCCAAAGGCCACATCATTGGAATATATACTGGAACTAGCAATGTACTTGAGCCTAAAAATAAAGAAAACGATAGAGGATACTTGGACGTTGTTTGGAACAAAAATGGAAAAGCTGGCAAGTTTCAGAGAGTTGTTGGGACAAATTTCTCAGTCATTGTAGCAAACAAGAACATAGTGGAGGTCTCATTTTCAAGAACATGGACGGCTTCCATGAAAGGCTCAAGTGTCCCCATAAACATAGACCAAAGGTATATATTGCGAAGAGGAGATTCTGGTTTTTATTCATACGTGATATTTGAAAGAACACCAGGATTACCGGCGGCGGAGGTTTATCAAGTTAGGATTGTTTTCAAACTCGACGAAGCCAGGTTTCGTTACATCGCCATATCCAATACTAGGCAAAGGAACATGCCTTCTCAGAGCGATAGAGAATTGGGTAGACCCTTGGAGTATCCTGAAGCTGTTCTCTTAACTCATCCAACTGACTCACAATTTAAGGGAGAGGTGGATGACAAATACCAATACTCGAGTGAAAACAAAGATAGCCGTGTGCATGGGTGGATTGCCGAAGATGATATAGCAGCAGAAGGTTTTTGGGTGATAACTCCAAGTAATGAGTTCCGCAGTGCTGGCCCTATCAAGCAAGAGTTAACCTCTCATGTTGGTCCAACAACTCTTTCCATGTTCACGAGCACTCACTACGGTGGCAAAGATGTAACCATGAATTTTGGTGAAGGGGAGACTTATAAAAAGGTTTTTGGCCCCATTTTTGTTTATCTTAACTCTTCTCCAAACAAAGCTCGGTTTCGGTCTCTGTGGTCAGATGCCGTAAAACAGTTATTCAAAGAAGTGAGAAGATGGCCTTATGATTTCGTTGGATCGAAAGATTTCATTCCACCCAATCAACGGGGAATAGTGTCAGGAAAACTACAAGTCCAAGATCGAATAGGGAAAGCTCAACCTGCTAAAAATGCTTACGTTGGACTAGCTTTGCCAGGAAATGCAGGATCATGGCAGAAAGAATGTAAGGGTTATCAATTCTGGACTCAAACTGATAGAAATGGACACTTCTTAATTGAAAATGTTGTACCTGGAGATTACAAATTATATGCATGGGTTCCTGGATTTATTGGGGATTATATGTATCCAACAAAGATTTCCATCAGACCAGGGAGAAACATCAAGTTGAACTCACTTGTATATTATCCTCCAAGAAATGGTCCAACTCTATGGGAAATTGGGATCCCTGATCGCTCAGCTGCAGAATTATATGTACCAGACCCTAACCCTGGGTTCAGAAACAAACTATACCCCAACAATGGCTCAGACAAGTTCAGGCAATACGGCTTGTGGGCACGTTACACTGAGTTATATCCAAAGAACGATCTCATTTACACAGTCGGTGTTTCAGACTATAATAAGGATTGGTTTTTTGCTCAAGTTACCAGGAGCACAGAAGAAAAAACGTTCATGCCAACCACATGGCAAATTCGATTCCAGCTTCAAAATATCACAAGGGGAGGAAACTACACACTGCAATTGGCCATTGCAGCCGCTACTATATCTAAATTGGAGGTTAGGTTGAACGAGGCGAAAGCAAAGCGTCCTTACTTCTCAGCAAGGCTAATTGGCAATGACAATGCCATAGCAAGGCACGGAATCCATGGATTGTATGAGTTGTATAGTGTAGTTGTAGGTAGTGATGAATTGGTAAAAGGAAAGAACATCATCTATTTGACACAGTCATTTGCCAAAGGTCCTTTCATGGGAGTTATGTATGATTATATTCGCTTTGAAACTCCTCCAACGGCTACTCAACATTGTGCATAG 2079 0.4199 LSQKMKEFCSHWWFKLALKLSLLLLGASSQMYDLHIDCFHLQRPSTVVNNLAARRPHSPVKLNTENPHQVVIGNGVVSFNLSKPKGHIIGIYTGTSNVLEPKNKENDRGYLDVVWNKNGKAGKFQRVVGTNFSVIVANKNIVEVSFSRTWTASMKGSSVPINIDQRYILRRGDSGFYSYVIFERTPGLPAAEVYQVRIVFKLDEARFRYIAISNTRQRNMPSQSDRELGRPLEYPEAVLLTHPTDSQFKGEVDDKYQYSSENKDSRVHGWIAEDDIAAEGFWVITPSNEFRSAGPIKQELTSHVGPTTLSMFTSTHYGGKDVTMNFGEGETYKKVFGPIFVYLNSSPNKARFRSLWSDAVKQLFKEVRRWPYDFVGSKDFIPPNQRGIVSGKLQVQDRIGKAQPAKNAYVGLALPGNAGSWQKECKGYQFWTQTDRNGHFLIENVVPGDYKLYAWVPGFIGDYMYPTKISIRPGRNIKLNSLVYYPPRNGPTLWEIGIPDRSAAELYVPDPNPGFRNKLYPNNGSDKFRQYGLWARYTELYPKNDLIYTVGVSDYNKDWFFAQVTRSTEEKTFMPTTWQIRFQLQNITRGGNYTLQLAIAAATISKLEVRLNEAKAKRPYFSARLIGNDNAIARHGIHGLYELYSVVVGSDELVKGKNIIYLTQSFAKGPFMGVMYDYIRFETPPTATQHCA 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03570 692 CDD RGL4_M 385 482 IPR029413 -
Vimu7g03570 692 CDD RGL4_C 494 682 - -
Vimu7g03570 692 Gene3D - 64 358 IPR014718 GO:0030246
Vimu7g03570 692 FunFam Rhamnogalacturonate lyase B 382 479 - -
Vimu7g03570 692 Gene3D - 490 682 - -
Vimu7g03570 692 Pfam Rhamnogalacturonate lyase family 53 252 IPR010325 -
Vimu7g03570 692 Gene3D - 381 480 - -
Vimu7g03570 692 Coils Coil 597 617 - -
Vimu7g03570 692 Pfam Polysaccharide lyase family 4, domain II 406 478 IPR029413 -
Vimu7g03570 692 SUPERFAMILY Galactose mutarotase-like 64 347 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vimu7g03570 692 SUPERFAMILY Starch-binding domain-like 382 481 IPR013784 GO:0030246
Vimu7g03570 692 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 62 685 - -
Vimu7g03570 692 SUPERFAMILY Galactose-binding domain-like 489 682 IPR008979 -
Vimu7g03570 692 CDD RGL4_N 69 351 - -
Vimu7g03570 692 Pfam Polysaccharide lyase family 4, domain III 492 680 IPR029411 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03570 Vimu-Chr7 30383883 30387641 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03570 58 684 Polysaccharide Lyase AT1G09890 55.047 0.0 689
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03570 K18195 - gmx:100781089 1023.08