Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03560 ATGGGAAGGGGAAAGATTGTGATTGAAAGGATCGACAATTCCACCAGCCGGCAAGTGACTTTCTCAAAGAGGAGAAAGGGATTGATCAAGAAAGCCAAAGAGCTTGCAATCCTCTGTGATGCTCAAGTTGGCCTTCTCATATTCTCCAGCACGGGAAAGCTTTACGAGTATGCCAGCACCAGTAAAGCTGATGCTAGATCAGAATTTAACCTGCCAGAGTTTGTGGGGTATTGGGAGAATATCATCTTGGAAACGAAAGGGGCATTATTATCCAGCAAAATGATTGAGCACAGAGCTCAGCTAGCACATTGGTGGGATGTCCCCTCCCATAAGCAAAATGATGAAGTCCCATTTAGGATCCCTATCATTGGCAAATGCATGCATCGGATAAAGTGA 396 0.4495 MGRGKIVIERIDNSTSRQVTFSKRRKGLIKKAKELAILCDAQVGLLIFSSTGKLYEYASTSKADARSEFNLPEFVGYWENIILETKGALLSSKMIEHRAQLAHWWDVPSHKQNDEVPFRIPIIGKCMHRIK 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03560 131 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vimu7g03560 131 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 71 - -
Vimu7g03560 131 Gene3D - 13 71 IPR036879 GO:0003677|GO:0046983
Vimu7g03560 131 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vimu7g03560 131 CDD MADS_MEF2_like 2 61 IPR033896 GO:0000977|GO:0045944
Vimu7g03560 131 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vimu7g03560 131 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vimu7g03560 131 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vimu7g03560 131 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vimu7g03560 131 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vimu7g03560 131 SUPERFAMILY SRF-like 2 69 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03560 Vimu-Chr7 30324128 30325728 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03560 1 70 MADS-box Gene Family AT4G37940 78.571 8.21e-34 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vimu7g03560 SRF-TF 1.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03560 K09264 - gmx:100795778 119.012