Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03553 ATTATGATGGAGTTACCAGAAATTTGGGTATTGAAACTGGTTGTGGCATGTACTTTTTGTCTGCATATATTTATCAGATCAGTTTCTGGCTCTGCAACTGAAGGTGCAGTGAGACCATCCACGCCACAGGACTTGGAAATTGAGATTGAGGGAGTTTTTAGGGCTACCAAAGACTACATTGACTTCTGCTTAGTGAAGGGGGAGGTGGATCCGTTTATTTCTCAGCTGGAATTAAGGCCATTGCCAGAAGATTACCTACATGATTTGCCAGCCAGCGTTTTAAAATTGATAAGCAGAAATAGTCTCTGGGACACAAAAGATGAAATCAGGTTCCCAGATGACCCAAGTGATAGAATGTGGAAAGCAACTTCAAGTCCATCATCTGCTCTCCCGTTGTCTTACAATGTTAAAAATTTTGACCTCAAATCCAACATGACACCACCTTTACGAGTCCTACAGACAGCTCTTACCCACCCTGAGAGATTGGAGATCCACAGCAGCCTTGACACTGAGGATTATGAATATCGTGTATTTCTCTACTTCCTTGAATTAAATAGCACTGTCAAAGAAGGGAAAAGGGTGTTTGACATCTATGTTAATAGCAAGATTCAAAGGGAAAAGTTTGACATATTGGCGAGAGGGTCCAACTATACATACACTGTCTTGAATGTTTCAGCAAACGGTTTACTTAATTTAACCTTGGTCAAGACATCTGGTGCTGAGTTTGGACCCCTTTTGAATGCTTATGAGATCTTGCAAATACGATCATGGATCGAAGAGACCAACCAAAAAGATGTGGAAGTGATTCAGAAGATTAGAGAAGAACTGTTGTTGCAAAACCAAAACACTAAAGTGCTAGAGAGTTGGACCGGAGACCCTTGTATTTTCCCCTGGCACGGAATAGAGTGTGATGGTTCAAATGGCTCGTCTGTTATCACCAAGCTGGATCTTTCCTCAAGTAATTTCAAAGGACCAATTCCTTCTACTGTTACTGAGATGACCAACTTAAAAATACTGAACCTGAGCCACAACAATTTCAATGGTTATATTCCCTCGTTTCCACCATCCTCCTTGTTAATATCAATAGATCTAAGCTACAATGATCTTATGGGGTCACTTCCAGAATCAATTGTCTCACTGCCATATTTGAAATCTTTGTATTATGGCTGCAACAAACGCATGAGTGAAGACACTCCAGCTAATTTGAATGGTTCCCTGGTCAATACAGATTACGGAAGATGCAAAGCAAAAGAACCTAGATTTGGACAAGTATTTGTCATTGGTGCTATCACATGTGGATCACTTCTGATCACATTGGCAGTTGGAATCATTTTTGTTTGCCGCTATAGACAAAAGTTGATTCCATGGGAGGGATTTGGTGGAAAGAACTACTTAATGGAAACAAATGTAATATTCTCTTTGCCAAGCAAAGATGATTTCTTAATAAAGTCTGTATCAATTCAAACATTCACTTTGGAAGATATAGAGGTTGCCACAGAAAGGTACAAAACTTTGATAGGAGAAGGAGGATTTGGTTCTGTTTACCGGGGCACTCTAAATGACGGTCAAGAAGTGGCAGTGAAAGTCCGTTCAGCCACATCAACGCAGGGAACTCGAGAATTTGATAATGAGCTAAACCTTCTTTCGGCAATACAGCATGAAAACCTAGTGCCTCTTCTTGGTTACTGTAATGAAAATGATCAACAAATTCTTGTGTATCCTTTCATGTCAAATGGTTCTTTGCAAGACAGACTCTATGGGGAACCCGCAAAGAGAAAAATATTAGACTGGCCAACTAGACTCTCTATTGCTCTTGGTGCAGCTCGAGGCAAGTAA 1836 0.4041 IMMELPEIWVLKLVVACTFCLHIFIRSVSGSATEGAVRPSTPQDLEIEIEGVFRATKDYIDFCLVKGEVDPFISQLELRPLPEDYLHDLPASVLKLISRNSLWDTKDEIRFPDDPSDRMWKATSSPSSALPLSYNVKNFDLKSNMTPPLRVLQTALTHPERLEIHSSLDTEDYEYRVFLYFLELNSTVKEGKRVFDIYVNSKIQREKFDILARGSNYTYTVLNVSANGLLNLTLVKTSGAEFGPLLNAYEILQIRSWIEETNQKDVEVIQKIREELLLQNQNTKVLESWTGDPCIFPWHGIECDGSNGSSVITKLDLSSSNFKGPIPSTVTEMTNLKILNLSHNNFNGYIPSFPPSSLLISIDLSYNDLMGSLPESIVSLPYLKSLYYGCNKRMSEDTPANLNGSLVNTDYGRCKAKEPRFGQVFVIGAITCGSLLITLAVGIIFVCRYRQKLIPWEGFGGKNYLMETNVIFSLPSKDDFLIKSVSIQTFTLEDIEVATERYKTLIGEGGFGSVYRGTLNDGQEVAVKVRSATSTQGTREFDNELNLLSAIQHENLVPLLGYCNENDQQILVYPFMSNGSLQDRLYGEPAKRKILDWPTRLSIALGAARGK 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03553 611 ProSiteProfiles Protein kinase domain profile. 500 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g03553 611 Pfam Leucine rich repeat N-terminal domain 263 304 IPR013210 -
Vimu7g03553 611 Pfam Malectin-like domain 50 253 IPR024788 -
Vimu7g03553 611 PANTHER OS07G0107800 PROTEIN-RELATED 48 610 - -
Vimu7g03553 611 FunFam Leucine-rich repeat receptor-like kinase 264 397 - -
Vimu7g03553 611 ProSitePatterns Protein kinases ATP-binding region signature. 506 528 IPR017441 GO:0005524
Vimu7g03553 611 FunFam Nodulation receptor kinase 465 575 - -
Vimu7g03553 611 Gene3D Transferase(Phosphotransferase) domain 1 482 610 - -
Vimu7g03553 611 Gene3D - 104 255 - -
Vimu7g03553 611 Gene3D Ribonuclease Inhibitor 261 416 IPR032675 -
Vimu7g03553 611 Pfam Protein tyrosine and serine/threonine kinase 504 610 IPR001245 GO:0004672|GO:0006468
Vimu7g03553 611 SUPERFAMILY Protein kinase-like (PK-like) 481 610 IPR011009 -
Vimu7g03553 611 SUPERFAMILY L domain-like 279 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03553 Vimu-Chr7 30259728 30265509 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03553 50 610 Receptor kinase-like Gene Family AT2G37050 31.167 1.66e-65 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vimu7g03553 Malectin_like 2.1e-34 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03553 - - gmx:100781986 1007.28