Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03552 ATGGCTGAAGCTGCCAATGGCCGCCGTCGTGTTGAAACAGTGATTGACATAAGGAAACCACCCGTGAGCTTCACCGGAGGTCTTGTGTTTGAGTGCCTGACTTACACTGTGACAAAAAAGGCAAAGGTGGAGGGGAAGTGGTCGAATGAAGAGGTGGATTTGCTGCATGATATCACTAGTTATGCTCCAAAGGGTTGTATCACTGCAGTGATGGGCCCTAGTGGTGCAGGAAAGTCCACTCTTTTGGATGGTCTTGCTGGGAGAATTGCTAGTGGAAGCCTTAAAGGGAAGGTCTCCTTGGATGGTGCAACTATGAGTGCAAGTTTGATCAAAAGAACTTCTGCATATATCATGCAGGAAGATAGGCTTTTCCCTATGCTAACTGTCTATGAGACTTTCATGTTTGCTGCCGATTTCCGCCTTGGACCACTCTCACTTGCTGATAAGAAACACAGAGTGGAGAACCTCATTAACCAGCTTGGCTTAACGTCATCTCGGAACACCTACATAGGAGATGAAGGGACAAGAGGAGTGTCCGGCGGAGAGCGGCGGCGCGTCTCAATCGGCGTGGACATCATCCACGGCCCATCACTTCTCTTTCTGGACGAGCCAACCTCAGGGCTAGACTCTACCAGCGCCCACAGCGTGATCGAGAAAGTGCACGACATCGCACGCAGCGGCAGCACCGTCATCCTCACCATCCACCAGCCCTCGTCCAGAATCCAACTCCTCCTCGACCACCTCATCATCCTCGCACGGGGCCAGCTCATGTTCCAAGGGTCGCCGCAAGACGTGGCCCTCCACTTGTCACGCATGCCACGCAAAGTCCCCAAGGGAGAGAACCCCATTGAAAGTCTCATTGACGTGATCCAAGAGTACGATCAGAGTGAGGTTGGAGTTGAAGCACTTGCAGAGTTTGCACGCACTGGGGTGAAACCACCTCCTTTGTCCAACCAGCCCCACTCAGTGTCCACTGTTGCACCCTCTTATGCCAATTTCTCTCACCTTAGCCACAGGTTTGAGGAGAAATCGGTGGAGTTTTCGCAGGTGAGTAGAAAGGCAGTAGACGGTTTTGATCACAGTCTCAGAAGTCCCTATAACAACACTTCCATGTCGTGGAGCACTGGGAATAGTGCAGCATTTCTCAAGTTCACACCAGCACGGCTTAAGAATGATCACAAGGCCCACAATACCACAAGCAATATAAATATTGTTGTTGGCATGCTTATGATGAATTGTGTGCTACGCAGAAACAATGCTTCACCTGGCTACTACACATACTCGAGTGAAATCTTTCAAGCCACTCCAACACCCCACAGCAGTGACTACGCAGTGAATGAGAATGACTACCTCACTCCCTCAAATGGCACAAAAGAACACCTTGGCCCAAAGTTTGAAAATTCTTACATAACAGAGATATGGATACTCATTCGCCGCAACTTCATAAACATAAGGCGCACCCCTGAGCTTTTCCTCTCAAGACTGTTGGTTCTCACCTTCATGGGTTTCATGATGGCAACCATGTTCCACAACCCTAAAAAAGATTTGCAAGGAATCACCAACCGCCTCAGCTTCTTCATCTTCACAGTGTGCCTCTTCTTCTTCTCTTCCAACGATGCTGTCCCAGCCTTCATCCAAGAAAGGTTCATCTTCATAAGGGAAACTTCTCACAATGCCTATAGAGCTTCCACTTACACCATTGCAGGCATCATCACTCACATGCCATTCATTCTTCTCCAAGCAGCTGCCTATGCAGGCATTGTTTGGTTTGCCCTAAAACTCCGAGGCCCTTTTCTTTACTTCTTGCTTGTTCTATTCGTTTCTCTTCTGTCAACCAATTCATTCGTTGTGTTTGTGAGCTCAGTGGTGCCAAACTACATATTGGGTTATGCTATGGTTATTGCCTTCACTGCCTTGTTCTTCTTGTTCTGTGGATACTTCTTGAGCAGCCATGACATTCCCCGTTACTGGCGTTGGATGAACACAATTTCAACGATGACATACCCTTATGAGGGGCTCTTGATGAACCAGTACCAGGTCAACGATACCTTTGGATATATAGATGGAGTACCCATTACCGGTTTTCAGATCTTGGAGAGTCTACATATCAAGACTGATGGAAGTAGGAAGAGGACAGTGGATTTTATTTTACCTAGTCCTTCGTTTTGCATCGAAAAACCAGAGGTCGTAGAGAACTGTATCTAA 2205 0.4789 MAEAANGRRRVETVIDIRKPPVSFTGGLVFECLTYTVTKKAKVEGKWSNEEVDLLHDITSYAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVSLDGATMSASLIKRTSAYIMQEDRLFPMLTVYETFMFAADFRLGPLSLADKKHRVENLINQLGLTSSRNTYIGDEGTRGVSGGERRRVSIGVDIIHGPSLLFLDEPTSGLDSTSAHSVIEKVHDIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGSPQDVALHLSRMPRKVPKGENPIESLIDVIQEYDQSEVGVEALAEFARTGVKPPPLSNQPHSVSTVAPSYANFSHLSHRFEEKSVEFSQVSRKAVDGFDHSLRSPYNNTSMSWSTGNSAAFLKFTPARLKNDHKAHNTTSNINIVVGMLMMNCVLRRNNASPGYYTYSSEIFQATPTPHSSDYAVNENDYLTPSNGTKEHLGPKFENSYITEIWILIRRNFINIRRTPELFLSRLLVLTFMGFMMATMFHNPKKDLQGITNRLSFFIFTVCLFFFSSNDAVPAFIQERFIFIRETSHNAYRASTYTIAGIITHMPFILLQAAAYAGIVWFALKLRGPFLYFLLVLFVSLLSTNSFVVFVSSVVPNYILGYAMVIAFTALFFLFCGYFLSSHDIPRYWRWMNTISTMTYPYEGLLMNQYQVNDTFGYIDGVPITGFQILESLHIKTDGSRKRTVDFILPSPSFCIEKPEVVENCI 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03552 734 CDD ABCG_EPDR 28 260 - -
Vimu7g03552 734 FunFam ABC transporter G family member 6 38 276 - -
Vimu7g03552 734 ProSitePatterns ABC transporters family signature. 178 192 IPR017871 GO:0005524|GO:0016887
Vimu7g03552 734 Pfam ABC-2 type transporter 472 678 IPR013525 GO:0016020|GO:0140359
Vimu7g03552 734 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 266 IPR027417 -
Vimu7g03552 734 Pfam ABC transporter 55 206 IPR003439 GO:0005524
Vimu7g03552 734 Gene3D - 40 273 IPR027417 -
Vimu7g03552 734 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 27 681 - -
Vimu7g03552 734 SMART AAA_5 64 262 IPR003593 GO:0016887
Vimu7g03552 734 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 28 278 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03552 Vimu-Chr7 30249105 30254222 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03552 48 292 Calmodulin-binding Proteins AT2G36910 26.210 3.36e-11 65.1