Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03537 ATGGACGGTTTTGATTTCTCCGTCAGAATGCATCGCTACCGTCCAACGCAAAATCTGAAATCCATATCATTGTTATTAAACTATCAGACAACTGCTGAGGAATTTGCGCGAGCGCGGATCTACTTAGCTTCTGAGCTTTGTGTTTACTTATTATTTGCTGAAGAGGCTGAGGTTGTGAAGAAGATTAATGGCGTGATCGTTATGATTGGACCTTTTTTCATCATGCTGAAGCGTGATTTTCTCATAAATGTTTGGTTTGATTGTGTTTGGAATGTGATGTCGCCGCCGGCGGTGGTAACGGAAGAGGATGGGCTGAGCAAGGTGTCGTCGACTGTAGCGTCTGGTTCTTCGCAGTCCTTGGATTGTTTCTCTCAGAATGGGGCTGGATTGAAAGAAAGGAATTACTTAGGGTTGTCTGATTGCTCATCAGTGGATAGCTGTGCATCTACTGTACCAGGCTTGGGTGATGAGAAAAAGGAGAACATGAATTTGAAGGCTACGGAGTTGAGGCTGGGTCTTCCCGGGTCACAGTCACCTGAAAGGGATCCCGATCTTTTCTCTTTAAGCTCAGCAAAGCTCGACGAGAAGCCACTGTTCCCTTTAGTTCCTACTAAAGACGGAATTTGCTTGTCGTCCCAGAAAACTGTTGTTTCCGGCAACAAGAGAGGTTTTGCTGATACCATGGATGGGTTTTCTCAGGGGAAGTTTACTGGTAATACGGGGATGAACGCAATGCTGTCACCTAGGCCTTCTTGTGCTCAGCCTTCTGCAATGAAAGAAATTCCAAGCAAGTTGCAAGAACGGCCTTGTTCAGCTAATAATGGAACCGGTCATAACCATACAGGTGCTTCTATAAGTGGCAGTGCACCGGCTTCTAAGGCACAGGTTGTCGGTTGGCCTCCTATAAGATCGTTTAGGAAAAACTCCATGGCCACTACATCCAACAAGAACAATGATGAAGTGGATGGAAAACCAGGTGGTGGCGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCCTATCTTAGGAAAGTAGATCTAAGAAGTTATTCAACATATCAGGAGCTATCTTCTGCACTTGGGAAAATGTTCAGCTGTTTTACCTTAGCTCCAGGAAGAGAAATGTTGAGTGAGAGTAAGCTGAGGGATCTTCTGCACGGTTCAGAGTATGTCGTCACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGGGATGTACCCTGGGAGGATGACTTGCTTCTTTACAGAATGCCTGAGTGGCAGTGGCTAATGAGTGGGAGGGGAAACTCCCAGGGCCATGGAAAAGTCCAAAAGCAGGACTTAAAGGTATTTGGGACCGCCTTTTGTCTAATCAAAAGCTTTATTGCTGGATCCGTAGTGGGAAAAAAGGAAGATGACTGA 1404 0.4573 MDGFDFSVRMHRYRPTQNLKSISLLLNYQTTAEEFARARIYLASELCVYLLFAEEAEVVKKINGVIVMIGPFFIMLKRDFLINVWFDCVWNVMSPPAVVTEEDGLSKVSSTVASGSSQSLDCFSQNGAGLKERNYLGLSDCSSVDSCASTVPGLGDEKKENMNLKATELRLGLPGSQSPERDPDLFSLSSAKLDEKPLFPLVPTKDGICLSSQKTVVSGNKRGFADTMDGFSQGKFTGNTGMNAMLSPRPSCAQPSAMKEIPSKLQERPCSANNGTGHNHTGASISGSAPASKAQVVGWPPIRSFRKNSMATTSNKNNDEVDGKPGGGALFVKVSMDGAPYLRKVDLRSYSTYQELSSALGKMFSCFTLAPGREMLSESKLRDLLHGSEYVVTYEDKDGDWMLVGDVPWEDDLLLYRMPEWQWLMSGRGNSQGHGKVQKQDLKVFGTAFCLIKSFIAGSVVGKKEDD 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03537 467 SUPERFAMILY CAD & PB1 domains 326 414 - -
Vimu7g03537 467 Gene3D - 326 418 - -
Vimu7g03537 467 ProSiteProfiles PB1 domain profile. 329 430 IPR000270 GO:0005515
Vimu7g03537 467 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 162 410 IPR003311 GO:0005634|GO:0006355
Vimu7g03537 467 MobiDBLite consensus disorder prediction 267 291 - -
Vimu7g03537 467 Pfam AUX/IAA family 167 410 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03537 Vimu-Chr7 30133258 30137775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03537 331 410 B3 DNA Binding Superfamily AT5G37020 38.750 2.63e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vimu7g03537 AUX_IAA 2.4e-66 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03537 K14484 - gmx:547502 580.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03537 7 30133258 30137775 Vimu7g03537 7 30133258 30137775 ECH
Vimu7g03537 7 30133258 30137775 Vimu7g03537 7 30133258 30137775 PCT