Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03536 ATGTCTCTTCTATTACGAAGACCACCAGGTCGCGAAGCTTATCCAGGGGATGTTTTTTATTTACATTCGCGTCTTTTGGAAAGAGCCGCTAAATTAAGTTCTCAGTTAGGCAAAGGAAGCATGACTGCTTTACCAATAGTTGAAACTCAATCGGGAGATGTTTTAGCTTATATTCCTACGAATGTAATTTCCATTACAGATGGCCAAATATTCTTATCGGCCGATCTATTCAATGCTGGAATAAGACCCGCTATTAATGTCGGTATTTCAGTTTCCAGAGTTGGATCGGCGGCTCAAATAAAAGCCATGAAACAAGTAGCTGGTAAATTAAAATTGGAATTAGCACAATTCGCAGAATTAGAAGCTTTTGCACAATTCGCTTCTGATCTAGATAAAGCTACTCAAAATCAATTAGCAAGAGGTCAACGATTGCGCGAGTTGCTTAAACAATCCCAATCAGCTCCTCTTACTGTGGAAGAATAG 483 0.3934 MSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGKGSMTALPIVETQSGDVLAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEE 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03536 160 Gene3D - 100 160 IPR038376 -
Vimu7g03536 160 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 1 92 IPR000194 GO:0005524
Vimu7g03536 160 CDD ATP-synt_F1_alpha_C 103 160 IPR000793 GO:0015986
Vimu7g03536 160 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 1 160 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vimu7g03536 160 Gene3D - 1 99 IPR027417 -
Vimu7g03536 160 ProSitePatterns ATP synthase alpha and beta subunits signature. 83 92 IPR020003 GO:0005524
Vimu7g03536 160 FunFam ATP synthase subunit alpha, mitochondrial 1 99 - -
Vimu7g03536 160 Pfam ATP synthase alpha/beta chain, C terminal domain 99 160 IPR000793 GO:0015986
Vimu7g03536 160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 98 IPR027417 -
Vimu7g03536 160 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 100 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03536 Vimu-Chr7 30130690 30131172 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03536 9 105 Primary Pumps ATPases(2) AT4G38510 35.052 1.97e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03536 K02111 - thj:32981776 280.411