Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03518 ATGGAAAGATACAAGAACGCGGCGTGTTTACGAAAAACTCGGTTTGGGCGTTTGGGTTTCGCGGAAGGCTCGCGCTTGCTCACTCTCAGTCAGTCCTCTGGAAACAAAATACTACTAAAATTCACCCTAAATGCACTCCAAATAAATTCCAAACCCAAATGCATTCTCCCTTGTTGGGTAGCTAGCTTTCTGTGTTTATCCCCTTTTCTCTTTCTTTTTTTCTCTCTCAATCCAACCCCAAAGGCCAAACCCCAATCACCACTGCTAAATCACCAACATCATCATCATCAACAACAACTCAGCGTCAGCGTCAGCGAGTGGATGAATCTCTGGGCCGACGATAACTCCTCTGTTATGGAGGCTTTCATGTCCTCCTCCGATCTCTCCTCCATATGGCCTCCGCCGGCGCCGCCGCAATCCACCGCTGTCTTCAACCAGGACACCCTCCAGCACCGCCTACAGGCCCTCATCGAGGGCGCCCGAGAGAGCTGGACCTACGCTATCTTTTGGCAGTCCTCCTACGACTATTCCGGCTCCACGCTCCTTGGCTGGGGCGACGGTTACTACAAAGGCGACGATGACAAGGCCAAGGCCAAGGCCAAAGCTAAAGCCACCTCCGCCGCCGAGCAGGACCACCGCAAGAAGGTCCTCCGCGAGCTCAACTCCCTCATCTCCGGCTCTTCCGCCACCGCCTCCGACGACGTAGACGAGGAGGTCACAGACACCGAGTGGTTCTTCCTTGTTTCCATGACCCAGTCCTTCGTCAACGGCGCCGGCTTGCCCGGCCAGGCCTTCTTCAATTCCAACCCCGTCTGGGTCACCGGCGGCGACCGCCTCTCCGCCTCCCCCTGCGAGAGAGCCCGCCAGGGCCAAGTCTTCGGCCTCCAAACCCTAGTCTGCATACCCTCCGCAAACGGCGTCGTTGAACTGGGGTCTACCGAGTTAATTTACCAGAACCCGGATCTGATGAACAAGGTCAAGGTCCTCTTCAATTTTAGCAACAACAACTTCGATATGGGTTCTTCTTGGCCTGCTACCAGCGCCGATCAAGGAGAAAACGACCCCTCCACGCTCTGGCTCAACGATCCTGAAGTTAGGGATTCCATTAACACTGTCGCAGCTACCCCTTCTGTATCCGTTTCTGTTCCCCCTCATAACAGTACTCACGGGATTTCAAAGACGATGCAGTTGGAGAGTTCTATTCAAACCCCTGGTTCCAGTACCTTAACTGAAACCCCAAGCTCTATCCACGCTGTTCCACAGAACCAGAGCGTGTTCTCCAGAGAATTGAACTTCTCTGAGTACTCTTTTGACCCCAAGAGTGGCAACACTAACAATCAGCATTCCCTGAAGCCCGAATCCTGCGAGATTCTCAGCTTCAGCGATAGCAAGAGAACCTCTTACGGCGGTGGCGGCGGGGGCGGGGGCGTCAATGGTAATTCCAATTCCAATTCAAATTTCTTCTCTGGTCAATCACCGTTTGTTGCTGTTGCGGATGAGAACAACAATAACAACAACGGGAAGAGAAGGTCGCCGAATTCGCGAGGCAGCAACGACGACGGAATGCTTTCGTTCACCTCCCGCGCGATTCTTCCGGCCACTAATTTGAAGTCTGCCGGTGGCGGCGATTCCGATCACTCGGATCTGGAAGCGTCGGTGGTAAAGGACCCTGTGGTGGAGCCGGAGAAGCGGCCCCGGAAGAGAGGGCGGAAGCCGGCGAACGGAAGAGAGGAACCGTTAAACCACGTGGAAGCGGAGAGGCAGAGGAGGGAGAAGCTGAATCAGAGGTTCTACGCGCTTCGTGCTGTGGTTCCCAACGTGTCCAAAATGGACAAAGCGTCGCTTCTGGGTGACGCAATATCTTACATTACGGAGCTGAAGTCCAAGCTTCAAACACTGGAATCAGATAAAGATGGGTTGCAGAAGCAACTTGAAGGAGTGAAGAAGGAACTCGAGAAATCAAGCGACAACGTTAATTCTAATCACATGAAACACGCGGGTAATAGTAACATTAAGTCCGCTAATCAGGCGTTGATTGACTTGGACATCGACGTGAAGATTATTGGGTGGGACGCGATGATAAGGATCCAATGCAGCAAGAAGAACCACCCCGCGGCGAGGTTGATGGCGGCGCTGATGGAGTTGGACTTGGACGTTCACCACGCCAGCGTGTCGGTGGTTAACGATTTGATGATCCAACAAGCGACGGTGAAGATGGGGAGTAGGTTTTACACGCAGGAGCAGCTTCGTTCGGCCCTCTCGGCTAAGGTTGGGGATGTACGATGA 2286 0.5354 MERYKNAACLRKTRFGRLGFAEGSRLLTLSQSSGNKILLKFTLNALQINSKPKCILPCWVASFLCLSPFLFLFFSLNPTPKAKPQSPLLNHQHHHHQQQLSVSVSEWMNLWADDNSSVMEAFMSSSDLSSIWPPPAPPQSTAVFNQDTLQHRLQALIEGARESWTYAIFWQSSYDYSGSTLLGWGDGYYKGDDDKAKAKAKAKATSAAEQDHRKKVLRELNSLISGSSATASDDVDEEVTDTEWFFLVSMTQSFVNGAGLPGQAFFNSNPVWVTGGDRLSASPCERARQGQVFGLQTLVCIPSANGVVELGSTELIYQNPDLMNKVKVLFNFSNNNFDMGSSWPATSADQGENDPSTLWLNDPEVRDSINTVAATPSVSVSVPPHNSTHGISKTMQLESSIQTPGSSTLTETPSSIHAVPQNQSVFSRELNFSEYSFDPKSGNTNNQHSLKPESCEILSFSDSKRTSYGGGGGGGGVNGNSNSNSNFFSGQSPFVAVADENNNNNNGKRRSPNSRGSNDDGMLSFTSRAILPATNLKSAGGGDSDHSDLEASVVKDPVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYITELKSKLQTLESDKDGLQKQLEGVKKELEKSSDNVNSNHMKHAGNSNIKSANQALIDLDIDVKIIGWDAMIRIQCSKKNHPAARLMAALMELDLDVHHASVSVVNDLMIQQATVKMGSRFYTQEQLRSALSAKVGDVR 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03518 761 Coils Coil 623 657 - -
Vimu7g03518 761 MobiDBLite consensus disorder prediction 403 422 - -
Vimu7g03518 761 CDD bHLH_AtAIB_like 574 650 - -
Vimu7g03518 761 PANTHER MYC 119 756 IPR045084 GO:0003700|GO:0006355
Vimu7g03518 761 MobiDBLite consensus disorder prediction 466 523 - -
Vimu7g03518 761 Pfam Helix-loop-helix DNA-binding domain 581 626 IPR011598 GO:0046983
Vimu7g03518 761 MobiDBLite consensus disorder prediction 548 587 - -
Vimu7g03518 761 Gene3D - 569 658 IPR036638 GO:0046983
Vimu7g03518 761 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 580 646 IPR036638 GO:0046983
Vimu7g03518 761 MobiDBLite consensus disorder prediction 535 587 - -
Vimu7g03518 761 FunFam Transcription factor bHLH13 570 644 - -
Vimu7g03518 761 MobiDBLite consensus disorder prediction 476 523 - -
Vimu7g03518 761 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 577 626 IPR011598 GO:0046983
Vimu7g03518 761 SMART finulus 583 632 IPR011598 GO:0046983
Vimu7g03518 761 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 149 330 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03518 Vimu-Chr7 29891072 29895273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03518 108 758 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 54.319 0.0 635
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu7g03518 bHLH-MYC_N 7.3e-56 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03518 K13422 - gmx:100790168 1043.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03518 7 29891072 29895273 Vimu7g03518 7 29891072 29895273 ECH