Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03517 ATGGCCTCAGATGCTTCATATGACAAGAACAATGTCTTTCGGAAACTCAAGGCAAAGTCTGAAAACAAGATGTGTTTCGATTGTAATGCAAAAAATCCAACTTGGGCATCCGTCACCTATGGGATCTTCCTCTGCATCGATTGTTCCGCTGCACATCGCAGTCTCGGTGTCCATCTCAGTTTTGTCAGGCAAGTTATTATCATTTGCACTATATCAACAAACTTAGACATGTGGAGTCCAGAGCAATTGAAAACCATGATCTTGGGAGGAAACAACCGTGCACGAAATTTCTTTAAGCAGCATGGTTGGACTGATGGTGGTAAAGTAGAGGCCAAATATACATCAAGAGCTGCAGAGTTATACAGACAAATTCTTTCTAAGGAAGTAGCTAAAAGTATGACAGATAAGGAGGTAGATTCACCATCATCACCTACTGCTTCTCAGTTTGAACAAGTTGTTGAAGAACTTCCTCGAGTAAAGACTAATGAATCACCAAACGAAAATGCTTCACACACAACAATTTCTAATACTGTCAGAAAACCTATTTCTGCTAAAAAAACAAAAAAAGCTGTGGGACTTGGTGCTAGAAAGCTTACTAGAAAGTCATGTGAGAATCTGTACGAGCAAAAACCAGAAGAACCACCAACCGCAACAAAAAAGCATACACTTTCAGGGTCATCATCTACATCACGATTTGAGTATATAGAAAATGACCAATCATTTGATCTGAATTCTAAAGGTAAGGGTCGCTTAGCAAGGCATGTATCCTTACCAGAGTCATCAAGCGTCTTTGCAGACTTCTTAATGGATAGTGGTTCTCCAAAGGAATTTGGGTCAAATTCATCAAAAGACAAAATTGAGGAGTCCAACGAAGCAAGAAGGAAATTCTCAAATGCTAAATCAATTTCTTCCTCTCAATTTTTTGGAGATCAAAACAAAGATGCAAATGATTCAAAAGTTATCCTCTCAAAATTTTCAGATTCTACTTCGATTTCTAGTGCCGATCTTTTTGGTAACTCTTCCAATGTTGATGCTTATGAAGACATTTCTTCTCTGAGAAATATGGCTGGTGAGACTGGGAAGAAACTCAGTTTCTTGGCCTCCAATCTGATAACAGATATTCAGGATAGAACAATTTAA 1140 0.3842 MASDASYDKNNVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAAHRSLGVHLSFVRQVIIICTISTNLDMWSPEQLKTMILGGNNRARNFFKQHGWTDGGKVEAKYTSRAAELYRQILSKEVAKSMTDKEVDSPSSPTASQFEQVVEELPRVKTNESPNENASHTTISNTVRKPISAKKTKKAVGLGARKLTRKSCENLYEQKPEEPPTATKKHTLSGSSSTSRFEYIENDQSFDLNSKGKGRLARHVSLPESSSVFADFLMDSGSPKEFGSNSSKDKIEESNEARRKFSNAKSISSSQFFGDQNKDANDSKVILSKFSDSTSISSADLFGNSSNVDAYEDISSLRNMAGETGKKLSFLASNLITDIQDRTI 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03517 379 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 136 IPR001164 GO:0005096
Vimu7g03517 379 MobiDBLite consensus disorder prediction 157 195 - -
Vimu7g03517 379 MobiDBLite consensus disorder prediction 162 181 - -
Vimu7g03517 379 SMART arf_gap_3 10 134 IPR001164 GO:0005096
Vimu7g03517 379 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Vimu7g03517 379 PRINTS HIV Rev interacting protein signature 70 91 IPR001164 GO:0005096
Vimu7g03517 379 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Vimu7g03517 379 Pfam Putative GTPase activating protein for Arf 11 114 IPR001164 GO:0005096
Vimu7g03517 379 MobiDBLite consensus disorder prediction 132 151 - -
Vimu7g03517 379 MobiDBLite consensus disorder prediction 207 230 - -
Vimu7g03517 379 MobiDBLite consensus disorder prediction 136 150 - -
Vimu7g03517 379 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 146 - -
Vimu7g03517 379 MobiDBLite consensus disorder prediction 274 294 - -
Vimu7g03517 379 MobiDBLite consensus disorder prediction 280 294 - -
Vimu7g03517 379 SUPERFAMILY ArfGap/RecO-like zinc finger 10 133 IPR037278 -
Vimu7g03517 379 CDD ArfGap_ArfGap2_3_like 8 131 - -
Vimu7g03517 379 Gene3D Arf GTPase activating protein 1 148 IPR038508 -
Vimu7g03517 379 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 5 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03517 Vimu-Chr7 29871574 29875195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03517 13 99 C2H2 Transcription Factor Family AT4G21160 40.909 1.32e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03517 K12493 K11855 gmx:100789796 488.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03517 7 29871574 29875195 Vimu7g03517 7 29871574 29875195 ECH
Vimu7g03517 7 29871574 29875195 Vimu7g03517 7 29871574 29875195 PCT