Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03507 ATGGCTACTTTAGAATCTGCCCTCACCTTGTTCGCACCTCAACGATTTTCGGATAATTATCGTTCGTCTGCAAAACCACCTCACTCCATTAAGCTTCATACTTCCTCTTCCCTTTTCTTCTCTTCCAAGGCCTCTTTCAAATCTGCAAGACTCTGCTTCCAGCTATGCTCTGCTCTGCAAGAGCTACCCACAACAGAGAAAACACCTGACTCAACCCAACCAACTGACAATCTCACCAAGCTCTACGTAGCTAACTTGCCTTGGACTCTGTCGCCGGCCGACATCAAGAACCTTTTTGCCCAATGCGGACCTGTAACCGACGTCGAGATAATAAGGAACAAAAAAGGGAGGCACATGGGATACGCCTTCGTTACTATGGATTCCGGGGAAGAGGCTCAGGCTGCCCTTGATAAATTTGATACATATGAATTATCAGGACGGATAATAAGGGTAGAGTTTGCAAAGCAATTGAATAAACCTCCTCCTTCTCCTTCTCCTCCTCCACCTCCTTCAGGTCGTCGCAATCCTAGAGAGACACGACATGTACTTTATGTATCCAACCTTACATGGAAAGCAAGATCTACCCATCTCAGGCAAGTCTTCACTGAAAATTTCAAAACACCAGTTTCAGCCAGGGTTGTCTTTGACAGCCCTTCTAAACGATCAGCTGGGTACGGATTTGTTTCTTTTCTTACGAAGGAGGATGCAGAGGCTGCCATTTCTGCTGTGGACGGGAAGGAAAATAATTTACTTTTTGCCCGTCCTTTGCAGGAGTTAATGGGACGACCCCTTCGCCTAACATTCAGTGAAAAGAAGGATAAGGAAGCTGGAGGTGGAAAAGAGGAAGACCAAATTAAAGATGCTGGAATTGAAGATGAAGACCAAAGTTCTGATGCTCAACCAGAAGAGTCATAA 915 0.4546 MATLESALTLFAPQRFSDNYRSSAKPPHSIKLHTSSSLFFSSKASFKSARLCFQLCSALQELPTTEKTPDSTQPTDNLTKLYVANLPWTLSPADIKNLFAQCGPVTDVEIIRNKKGRHMGYAFVTMDSGEEAQAALDKFDTYELSGRIIRVEFAKQLNKPPPSPSPPPPPSGRRNPRETRHVLYVSNLTWKARSTHLRQVFTENFKTPVSARVVFDSPSKRSAGYGFVSFLTKEDAEAAISAVDGKENNLLFARPLQELMGRPLRLTFSEKKDKEAGGGKEEDQIKDAGIEDEDQSSDAQPEES 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03507 304 MobiDBLite consensus disorder prediction 155 177 - -
Vimu7g03507 304 SUPERFAMILY RNA-binding domain, RBD 78 248 IPR035979 GO:0003676
Vimu7g03507 304 CDD RRM_SF 81 152 - -
Vimu7g03507 304 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 156 IPR000504 GO:0003723
Vimu7g03507 304 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 271 IPR000504 GO:0003723
Vimu7g03507 304 MobiDBLite consensus disorder prediction 266 293 - -
Vimu7g03507 304 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 149 IPR000504 GO:0003723
Vimu7g03507 304 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 247 IPR000504 GO:0003723
Vimu7g03507 304 SMART rrm1_1 182 254 IPR000504 GO:0003723
Vimu7g03507 304 SMART rrm1_1 80 152 IPR000504 GO:0003723
Vimu7g03507 304 Gene3D - 162 285 IPR012677 -
Vimu7g03507 304 Gene3D - 54 161 IPR012677 -
Vimu7g03507 304 MobiDBLite consensus disorder prediction 159 173 - -
Vimu7g03507 304 PANTHER OS02G0815200 PROTEIN 16 271 - -
Vimu7g03507 304 MobiDBLite consensus disorder prediction 266 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03507 Vimu-Chr7 29744711 29747948 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03507 78 274 Eukaryotic Initiation Factors Gene Family AT1G71770 23.188 7.25e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03507 - - vum:124843240 536.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03507 7 29744711 29747948 Vimu7g03507 7 29744711 29747948 ECH