Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03506 ATGACTTCTCTTGGCAACCCCAAAAGTTTGGTGCCATACATGAACAACAAAGACTGTTCTCTAGGGTTTTGCAGCTTGTATTGTCCACAGTGGTGTTATGTAATCTACCCTCCTCCTCCTCCCTTCGAATTTCCTGCTGATGATTCCAGTCCAAATTTCTCTCCTCTAGTAATCGCTGTCATTGGGGTCTTGGCCAGTGCTTTTCTTCTTGTGAGTTACTATACCTTAATATCCAAGTACTGTGGCAGCAGAGAATCTTCACAAAGCGAAGATCACGAAGAAAACGTTGAATTGGAAGATGATCACAACCCTTCGCTCCACGAGCCTTGGCATGCTCCAACCATTGGGTTAGACGAGGCTCTGATAAAGTCCATAACAGTTTGCAAGTACAAGAAAGGCGATGGGTTGGTTGAGGTGACAGATTGCCCTGTTTGTCTCAGCGAGTTTGAAGACGATGAAAGTGTTAGACTCTTGCCTAAATGCAGCCATGCTTTTCATCTCCCTTGCATTGACACGTGGCTCAAATCTCACTCCAGTTGCCCTCTATGTCGTGCTAGCATATTCACCTTCAATGCTGGAGCACTTCATGTGGCTACCCCAGTCATAGAATTGGGCCGTGAAACTTCAGAAAACCAACATGCAGATGAACATGTTGCTGTTACTACAAGGGACAGTGATTTGGATGCAGTGGAAGGAGAAGTCTCACACGGTGAAGCAGTTCCGAAGACTGCATTGCGTGCTTTGAGTGATCTAGGAAATTTGAGAGGAAGGCATAGTGTAATTGAGATTAGAGATGAAGAGTATGATTCCATCAGAAGGACAGTTTCCATGGATCATTCATTTCAAAGGGGTAATGGTCTTTTTGTGGCTGATGTTCTCCATTTGAACCAAGAGCGTGAAGGATGTTCCAATGGGGCTGGCCCTTCAAAGGGTTCAAGAGGTGAAAGTAGCAAGTCTAGCCATAGAAGAAGGGTTTTGCATTATGTTTTGAGTCCAATTACAATGAAGAGGTCATTTTCTAGTGGAAGATTCTCCCTTAGCAGAAATGGCAGAGGAAGGCAATGGGTTCTCCCTGTCTGA 1080 0.4481 MTSLGNPKSLVPYMNNKDCSLGFCSLYCPQWCYVIYPPPPPFEFPADDSSPNFSPLVIAVIGVLASAFLLVSYYTLISKYCGSRESSQSEDHEENVELEDDHNPSLHEPWHAPTIGLDEALIKSITVCKYKKGDGLVEVTDCPVCLSEFEDDESVRLLPKCSHAFHLPCIDTWLKSHSSCPLCRASIFTFNAGALHVATPVIELGRETSENQHADEHVAVTTRDSDLDAVEGEVSHGEAVPKTALRALSDLGNLRGRHSVIEIRDEEYDSIRRTVSMDHSFQRGNGLFVADVLHLNQEREGCSNGAGPSKGSRGESSKSSHRRRVLHYVLSPITMKRSFSSGRFSLSRNGRGRQWVLPV 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03506 359 Pfam Ring finger domain 141 184 IPR001841 -
Vimu7g03506 359 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Vimu7g03506 359 SUPERFAMILY RING/U-box 122 189 - -
Vimu7g03506 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 190 IPR013083 -
Vimu7g03506 359 CDD RING-H2_EL5-like 141 184 - -
Vimu7g03506 359 FunFam RING-H2 finger protein ATL54 117 190 - -
Vimu7g03506 359 PANTHER RING-H2 FINGER PROTEIN ATL16 41 325 IPR044600 GO:0016567|GO:0016740
Vimu7g03506 359 SMART ring_2 142 183 IPR001841 -
Vimu7g03506 359 MobiDBLite consensus disorder prediction 299 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03506 Vimu-Chr7 29738274 29740391 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03506 6 359 C3H Transcription Factor Family AT5G17600 41.114 5.46e-67 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03506 - - gmx:100792267 615.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03506 7 29738274 29740391 Vimu7g03506 7 29738274 29740391 ECH
Vimu7g03506 7 29738274 29740391 Vimu7g03506 7 29738274 29740391 PCT