Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03505 ATGTTCCCCACGTTCCTCTACGCCACCGTCAAGGATCTCCGCACGGAGAAGAAGTACTCACTCGAATGCGCCATTTGCTTGCTGGAGTTCGACGACGACTGCATTCTGCGTCTCTTAACCCCCTGCTGCCACGTTTTCCACCAGGACTGCATCGACTCCTGGCTCCGCTCGCACAGGACTTGCCCCGTTTGCCGCACGGATCTCGATACTCAGGCAAGTAACACCGACGCGCAGAGAGCTGAGCAAAACGAGGAGAATATGGAACACGAGATAAGCGATCACGTGAGCGTTGATGTGAAAGAAGGTGATGATGGTGATGAAGGAGGTTCGATGAATGTGCGCATGCAGCGAGAGAAGTTTGCAAGTGCACGTTCACACTCGACGGGGCATTCCATAGTTATGGTTAATGACGACAACGACGATGCTAAATACACTCTGAGATTGCCCCAAGATGTGGCTTTGAAAATTGTAAGAGGGCACCATCATTCTAAGAGTTGTTCTAGTTACAAAGACATGGCAGGGCCTTCTTTTGCACCTTGTAGTAACTGTGGTTATGTTCAAACTGTACTTGATACCTGCAGTAGTAATGGTGTAAACAATACTTAA 606 0.4917 MFPTFLYATVKDLRTEKKYSLECAICLLEFDDDCILRLLTPCCHVFHQDCIDSWLRSHRTCPVCRTDLDTQASNTDAQRAEQNEENMEHEISDHVSVDVKEGDDGDEGGSMNVRMQREKFASARSHSTGHSIVMVNDDNDDAKYTLRLPQDVALKIVRGHHHSKSCSSYKDMAGPSFAPCSNCGYVQTVLDTCSSNGVNNT 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03505 201 FunFam E3 ubiquitin-protein ligase ATL6 1 71 - -
Vimu7g03505 201 PANTHER RING FINGER DOMAIN-CONTAINING 2 76 - -
Vimu7g03505 201 Pfam Ring finger domain 22 65 IPR001841 -
Vimu7g03505 201 SUPERFAMILY RING/U-box 19 75 - -
Vimu7g03505 201 SMART ring_2 23 64 IPR001841 -
Vimu7g03505 201 ProSiteProfiles Zinc finger RING-type profile. 23 65 IPR001841 -
Vimu7g03505 201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 76 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03505 Vimu-Chr7 29735450 29736055 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03505 2 158 Rapid Response to Elicitors AT3G05200 41.420 1.34e-31 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03505 - - vum:124842333 374.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03505 7 29735450 29736055 Vimu7g03505 7 29735450 29736055 PCT