Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03497 ATGGGTAGATCACCGTGTCGTGAGGAGATTAGTGTTGTAAAGAAAGGACCATGGACACCAGAAGAAGATGAGAAGCTGATTGATTATATCAGCAAACACAGCCATGGCAGTTGGAGAACGCTTCCAAAGCGTGCAGGGCTTAATAGATGTGGTAAGAGCTGCAGATTAAGGTGGACAAACTATCTGAGGCCTGATATCAAGAGAGGCCAATTCACTGAAGAAGATGAGAGAACTATCATCAACCTTCATTCAGTTCTCGGAAACAAGTATGTACACGTCTGCTTCCTTCCTCATCTGCCAGGGCGAACTGATAATGAGATCAAGAATTATTGGAACACTCACATAAGGAAGAAGCTTCTAAAGATGGGTATTGATCCAGAAACTCACAAGCCAAGGACAGACTTGAATCACCTCATGAGTCTTTCTCAGTTGCTTGGTATGTCAAACTTGAGCAGTGTTATGAATAGTACTTGGGGCAATAACCATCTTGGTTTACAACAAGATATCAATCAGCTAGCCAAAATACAACTGCTGCAAAATCTTTTGCAACTTATGAACAGCAATTCATTTGTTAACATGGGTAACCCTTACCTCTTTGGCAACCCCAACCTCAACCCTTTATTTCTGAACGGCATAAACCCCCTTAAGGAGCCTGTGGTGTTGAGTGGTAGTGAAAGATTTGCTAACCCTAGTGTGTACTCTCAAACACAAAGCGAGTGCTCCCAGCAACAGGATGTTTCAAAATCATTGGCAGATGTGGAGGGTGGATCCATTCCACAAGATCCTGATTACAGCAAAATTAGCAGCACCAACACCTATCATTCACATGAAAATCAAGAAGAAAACCCTCTCCCTGCATTAGTTGCTGCCTCTCCGAGGATGGGAACCTTAAACCCAATGGGCAGTGGTTGTGGTAACTTGGTACAAACGAGCGAAGAGTCACCTTCGAACACATTCTTTGATGATTGGGAGAAGTTGTTTGATGATGAAAGAAGCGGTTCCTATTGGAAAGAGATTCTAGAGTAA 1026 0.4298 MGRSPCREEISVVKKGPWTPEEDEKLIDYISKHSHGSWRTLPKRAGLNRCGKSCRLRWTNYLRPDIKRGQFTEEDERTIINLHSVLGNKYVHVCFLPHLPGRTDNEIKNYWNTHIRKKLLKMGIDPETHKPRTDLNHLMSLSQLLGMSNLSSVMNSTWGNNHLGLQQDINQLAKIQLLQNLLQLMNSNSFVNMGNPYLFGNPNLNPLFLNGINPLKEPVVLSGSERFANPSVYSQTQSECSQQQDVSKSLADVEGGSIPQDPDYSKISSTNTYHSHENQEENPLPALVAASPRMGTLNPMGSGCGNLVQTSEESPSNTFFDDWEKLFDDERSGSYWKEILE 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03497 341 Gene3D - 14 67 - -
Vimu7g03497 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Vimu7g03497 341 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 270 - -
Vimu7g03497 341 Gene3D - 70 119 - -
Vimu7g03497 341 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Vimu7g03497 341 Pfam Myb-like DNA-binding domain 68 114 IPR001005 -
Vimu7g03497 341 MobiDBLite consensus disorder prediction 262 279 - -
Vimu7g03497 341 SMART sant 14 64 IPR001005 -
Vimu7g03497 341 SMART sant 67 117 IPR001005 -
Vimu7g03497 341 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Vimu7g03497 341 MobiDBLite consensus disorder prediction 236 250 - -
Vimu7g03497 341 MobiDBLite consensus disorder prediction 236 282 - -
Vimu7g03497 341 FunFam MYB-related transcription factor 14 67 - -
Vimu7g03497 341 ProSiteProfiles Myb-like domain profile. 14 62 IPR001005 -
Vimu7g03497 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 119 IPR017930 -
Vimu7g03497 341 ProSiteProfiles Myb-like domain profile. 63 115 IPR001005 -
Vimu7g03497 341 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03497 Vimu-Chr7 29629437 29630550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03497 1 341 MYB Transcription Factor Family AT5G16770 46.591 1.60e-87 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu7g03497 Myb_DNA-binding 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03497 K09422 - gmx:100810159 494.582