Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03493 ATGAGAGGGAAACAGCAACGTGGAGCGGAAGACTCGTTCTTCGCTCCAAACGCTTCTGCCGCTCACCACAATTTGGGCTCACCAAACCACCGCAGGCCCACACGTAGGAACCGAGGCTCACACCAACCGAACTTGAAATACCGTGTCGTCAACAAGCCTGAAGCGGTTTCTTCCTTCAACTCTCACTCCGTTGAGGATGGCAACCTGGACGTAACTGTCGCATCCCTAAATCACCATGGCGAGGAAGCGGATGGTGCCTCCGAGCTTAACACCGTTGACGGCACTGATTGCGTGGCTGGGGAAGAAGGCGGCGACGACGACGACGACGACGACGACGACGGTGATGGAGAGGGCGATATTCAGACCAGACTTGATAAGCTGCTCTGTAAAATCGAGGAACCTGATTTGTCCGAGGAGCAGATCAGAATCAATGATCAATTGCAACAAGATGAGATACTTGTGGTGGAATCAATTTATGGAGAAAATGTTTTCGGCCTTGAGAGATGGAAAGGCTTGCGTTGTTTTCAGATACATATACACATTGATGTTTTGGGTGAAATAGCCATCACTGCTAAGTTGAACTCTCTTAATCAACTTGAGACTGTAAGCAGCAGTTCAGATGAATTCTTGTACACTTTCAAAGTCCACTATCTTCCCCCGGTTGTTTTGACTTGTTTATTACCTAAGTCGTACCCTAGCCACCAACCACCTGTTTTTACACTCTCTGTTAAGTGGTTGGAACCTGCGAAGATTCTGAGACTGTGTTCCAAGTTGGATTCAATATGGGCTGAACAACAAGGGCAGGAAGTAATTTACCCTTGGGTAGAATGGTTGCATTGTTCTTCTCTTTCTCATCTGGGATTTGATGAAGAAATCACTCTTGGGCCTTATGGCATGAATGTTGTCCAGGATGAGCGTGTTGTTTCAGGAGCTGAATGCATTGATATTGATATTCCTTTTTTACGAAATTACAATGATAAGAGACACAATGAGAACTTCCTCAAAGAACTACATCAATGTAACATCTGCTTTGGTGAATATGCAGGTTCTGAGTTTATCCGGTTACCATGTATGCATTTTTTTTGCCTCAAATGCTTGCAGACCTTTGCCCAGATACATGTAAAGGAAGGAACTGTTAGTAATCTTCAATGTCCTGAAGCAAAATGTACAGTTATGATTCCACCTGGCCTTTTAAAACACTTGCTAGATGACAGAGATTATGAGCGCTGGGAATCCATGATGTTGGAAAAAACACTTGCATCAATGTCTGATGTTGTTTACTGTCCAAGATGTGAAACCCCCTGTATAGAGGATGAAGACCAGCATGCTCAATGTGCAAAATGTTATTTTAGTTTTTGTACCCTTTGCAGGGAACGACGCCACGTTGGCATAGCATGCATGAGTCTAGATATGAAGCTTCAGATTTTGCAGGACCGTCAAAATTCATCCCATTTAAAGGAAGATCAAAAACGTAGAGAACGTGAAAAGATTAATGAAATGCTCAGTATGAAAGAAATTCATCGTGATTCCAAGCTATGCCCTTCTTGTGACATGGCAATTTCTCGAACCGAAGGTTGTAACAAGATGAAATGTGGAAATTGTGAACAATACTTTTGTTACCGCTGCAACAAGGCAATTGATCCATCAGATCCTTATGGACATTTCAGGGATGGTTCATGTGAGCTGTTCCCAAGAGAAATGGTTGAGTCCTGGCAAGAACGAATAAATAATCGTCAGGTAGTAGGACAATTACAGGCTGAGCTTTTTCCTCAACGAGGCTTGACATGTCCTAATTGTCGTCAATTTAATGCAAAGATTGGAAACAATAATCACTTGTTTTGCTGGGCATGCCAAAGCCACTACTGCTACTTGTGCAAAGAGATTGTGAGGCGTGGCACCAAGCATTATGGACCCAAGGGCTGCAAACAGCATTCCGAGGGCTAG 1944 0.4378 MRGKQQRGAEDSFFAPNASAAHHNLGSPNHRRPTRRNRGSHQPNLKYRVVNKPEAVSSFNSHSVEDGNLDVTVASLNHHGEEADGASELNTVDGTDCVAGEEGGDDDDDDDDDGDGEGDIQTRLDKLLCKIEEPDLSEEQIRINDQLQQDEILVVESIYGENVFGLERWKGLRCFQIHIHIDVLGEIAITAKLNSLNQLETVSSSSDEFLYTFKVHYLPPVVLTCLLPKSYPSHQPPVFTLSVKWLEPAKILRLCSKLDSIWAEQQGQEVIYPWVEWLHCSSLSHLGFDEEITLGPYGMNVVQDERVVSGAECIDIDIPFLRNYNDKRHNENFLKELHQCNICFGEYAGSEFIRLPCMHFFCLKCLQTFAQIHVKEGTVSNLQCPEAKCTVMIPPGLLKHLLDDRDYERWESMMLEKTLASMSDVVYCPRCETPCIEDEDQHAQCAKCYFSFCTLCRERRHVGIACMSLDMKLQILQDRQNSSHLKEDQKRREREKINEMLSMKEIHRDSKLCPSCDMAISRTEGCNKMKCGNCEQYFCYRCNKAIDPSDPYGHFRDGSCELFPREMVESWQERINNRQVVGQLQAELFPQRGLTCPNCRQFNAKIGNNNHLFCWACQSHYCYLCKEIVRRGTKHYGPKGCKQHSEG 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03493 647 Gene3D Ubiquitin Conjugating Enzyme 137 286 IPR016135 -
Vimu7g03493 647 SMART ibrneu5 495 560 IPR002867 GO:0008270
Vimu7g03493 647 SMART ibrneu5 408 466 IPR002867 GO:0008270
Vimu7g03493 647 Pfam IBR domain, a half RING-finger domain 503 547 IPR002867 GO:0008270
Vimu7g03493 647 Pfam IBR domain, a half RING-finger domain 408 466 IPR002867 GO:0008270
Vimu7g03493 647 SUPERFAMILY UBC-like 144 278 IPR016135 -
Vimu7g03493 647 ProSitePatterns Zinc finger RING-type signature. 357 366 IPR017907 -
Vimu7g03493 647 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 198 555 IPR031127 GO:0004842|GO:0016567
Vimu7g03493 647 MobiDBLite consensus disorder prediction 81 119 - -
Vimu7g03493 647 SUPERFAMILY RING/U-box 335 419 - -
Vimu7g03493 647 Pfam RWD domain 146 279 IPR006575 GO:0005515
Vimu7g03493 647 SUPERFAMILY RING/U-box 499 555 - -
Vimu7g03493 647 MobiDBLite consensus disorder prediction 1 63 - -
Vimu7g03493 647 MobiDBLite consensus disorder prediction 99 118 - -
Vimu7g03493 647 SMART RWD2001b 150 285 IPR006575 GO:0005515
Vimu7g03493 647 SUPERFAMILY RING/U-box 592 644 - -
Vimu7g03493 647 SUPERFAMILY RING/U-box 408 470 - -
Vimu7g03493 647 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 335 423 IPR013083 -
Vimu7g03493 647 SMART ring_2 428 516 IPR001841 -
Vimu7g03493 647 SMART ring_2 340 387 IPR001841 -
Vimu7g03493 647 SMART ring_2 596 625 IPR001841 -
Vimu7g03493 647 ProSiteProfiles Zinc finger RING-type profile. 340 388 IPR001841 -
Vimu7g03493 647 ProSiteProfiles TRIAD supradomain profile. 336 566 IPR044066 -
Vimu7g03493 647 CDD Rcat_RBR_RNF14 498 563 IPR047548 GO:0008270
Vimu7g03493 647 CDD BRcat_RBR_RNF14 419 470 - -
Vimu7g03493 647 Gene3D - 481 588 - -
Vimu7g03493 647 ProSiteProfiles RWD domain profile. 150 285 IPR006575 GO:0005515
Vimu7g03493 647 FunFam RBR-type E3 ubiquitin transferase 335 419 - -
Vimu7g03493 647 CDD RING-HC_ITT1-like 334 393 - -
Vimu7g03493 647 FunFam RBR-type E3 ubiquitin transferase 481 590 - -
Vimu7g03493 647 MobiDBLite consensus disorder prediction 28 42 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03493 339 570 C3H Transcription Factor Family AT2G31770 25.417 1.46e-15 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03493 K11971 - gmx:100500662 1073.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03493 7 29578177 29583715 Vimu7g03493 7 29578177 29583715 ECH