Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03487 ATGGATAGCGGTGTGTCCGCTCCGGCGGCGCCGATTCCGAACGCCAACGCGCCGCCGCCATTTCTGAGCAAGACTTACGACATGGTTGAAGACCCTTCCACCGACGCGATCGTGTCATGGAGCGCAACCAACAACAGCTTCATCGTGTGGGACCCACCCGAATTTGCCAGGGACCTTTTGCCCAAATACTTCAAACACAACAACTTCTCCAGCTTCTTGGTTGATTTAGATGATGTTGTGTTGTGTATTAGTATGATTCCTAAGTTTGATGGTTTAGCTATGCATACTTTACTGTTTTATATATCAATCAAGTTCTGTGCTTTTGTGGAGTGTGTTGACATCTCTCCTGTCTTTTTCTCTCTAACATCATCGATTGACTATCATTATCAGGGTTTCAGAAAGGTCGATCCAGACCGTTGGGAATTTGCAAATGAGGGTTTTTTGAGGGGTCAAAAGCACTTGCTTAGGAATATAACACGAAGAAAACCTGCCCATGGTCAAAATCATCAACAGGCTCAGCAACCCCATGGACAGAGTTCATCAGTAGGGGCATGTGTTGAAGTCGGAAAGTTTGGGCTTGAGGAAGAGGTTGAGAGGCTTAAAAGAGATAAGAATGTGCTCATGCAAGAGCTTGTGAGATTGAGGCAGCAGCAACAGACAACTGATAACCAGTTGCAAACAATGGTTCAGCGCCTTCAGGGAATGGAGCAACGACAGCAGCAAATGATGTCATTCCTTGCGAAAGCTGTCCAGAGCCCTGGATTCTTTGCTCAGTTTGTACAACAAAATGAGAGCAATAGGCGCATAAGTGAAGTCAACAAAAAGCGTAGGCTCAAGCAGGAAGGTATTGCAGAAACAGTGAGTGCTGCTACTCCAGATGGACAAATTGTTAAATATCAACCTCTGGCGAATGAAGCTGCAAAAGCCATGCTTAAACAGATCATGAAATGGGATACTTCTCGTGTAGAATCTTTTAATAAAAACCCCGAGGAGTACATCATTGGTGATGCTTCATCATCTTCCAGTGGAATGGACAGTAGTGGCTCTTCAGGCTGGACTTCCGGAGTCACTCTTAAGGAGGTATCTCCAGCTTCGGTGCAGTCTTCACACGTTCCAGCTGCTACTGGGACCCAAGGGCATGTTCGCCCGACTGTTAAACCTGAAATTCCGTCTGTACCACAAGCAGTAGCTTCTGAAAATGTTACAAAGGATGGAGGACATGGTGCGCCTTCTATCCCCGTTTCTCAAGCAGATATGGTGATCCCTGATCTTCCTCCAATATCAGAGATGGTGGCAGGAAATATGCTTGATATTCCCGAAGAAAATTATATGGCAACTGAATCGGATGAGGGATATATGGATCCTTCACTGGGCGATGCCGGGTCATTTCCCATTGATTTTGAGGTTATTTCACCTGATAACATTGATGATTTCTTAGGAAATCCTTCTATTTGGGATGAAATTTTGCAGACTTCAGTACCAGAGGATATCGACACCAATATTGCCGATGTACCCAACGGGAACGAGGTCCAGCCAACGGAAAATGGATGGAGCAAAACTCAACGTATGGATCACCTCACAGAGCAGATGGGTCTTCTTTCTTCTGATACAAAACGAGTTTGA 1623 0.4541 MDSGVSAPAAPIPNANAPPPFLSKTYDMVEDPSTDAIVSWSATNNSFIVWDPPEFARDLLPKYFKHNNFSSFLVDLDDVVLCISMIPKFDGLAMHTLLFYISIKFCAFVECVDISPVFFSLTSSIDYHYQGFRKVDPDRWEFANEGFLRGQKHLLRNITRRKPAHGQNHQQAQQPHGQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDNQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQNESNRRISEVNKKRRLKQEGIAETVSAATPDGQIVKYQPLANEAAKAMLKQIMKWDTSRVESFNKNPEEYIIGDASSSSSGMDSSGSSGWTSGVTLKEVSPASVQSSHVPAATGTQGHVRPTVKPEIPSVPQAVASENVTKDGGHGAPSIPVSQADMVIPDLPPISEMVAGNMLDIPEENYMATESDEGYMDPSLGDAGSFPIDFEVISPDNIDDFLGNPSIWDEILQTSVPEDIDTNIADVPNGNEVQPTENGWSKTQRMDHLTEQMGLLSSDTKRV 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03487 540 SUPERFAMILY "Winged helix" DNA-binding domain 19 76 IPR036390 -
Vimu7g03487 540 PRINTS Heat shock factor (HSF) domain signature 21 44 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu7g03487 540 PRINTS Heat shock factor (HSF) domain signature 59 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu7g03487 540 Coils Coil 190 217 - -
Vimu7g03487 540 Gene3D - 14 162 IPR036388 -
Vimu7g03487 540 FunFam Heat stress transcription factor B-4 13 81 - -
Vimu7g03487 540 Pfam HSF-type DNA-binding 21 161 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu7g03487 540 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 342 IPR027725 -
Vimu7g03487 540 SMART hsfneu3 17 161 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03487 Vimu-Chr7 29531700 29535195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03487 8 537 HSF AT1G32330 48.556 1.38e-153 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vimu7g03487 HSF_DNA-bind 1.6e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03487 K09419 - gmx:100815121 766.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03487 7 29531700 29535195 Vimu7g03487 7 29531700 29535195 ECH