LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu7g03486	ATGACATTGGTTATCAGAGAGAGGAGACACAAGCAAGCTCTCAGGCTTTCATTACCAAAATCTCCTTCAATTCCATCATCAAATTCAGATTCCCCTCACCAAATTCATGTACACTCTCCTCCAGGCATCATTAAGGATCTTTCGCATCTTGAAAAGCGAGAAGTTCTTGGTCATGGTAATGGTGGCACAGTTTACAAGGTTTATCACAAAAAAACCAGCTCTTTTTATGCCTTGAAAGTGCTACGTTTGAATGAGAATGGCTTTGGCATTCGTCAAACCGCTAAACTGGAGGCTGACATTCTAAAAAGAGTGGATTCACCGTATATAGTAAAGTGTCATGCAGTTTTTGACAGTTGTGACATTAGCTTTGTTATGGAATACATGGAAGGAGGGTCGTTGAATGATGTATTGAGAATACATCATAGACTGTCAGAAAAGGTTATCTCGGTGTTGGGTAGGCGTGTTTTGGAAGGACTTAGGTATTTACATGGCATGAACATTGTGCACAGAGATATTAAACCATCAAATTTACTTGTGAACGATAAAGGGGAGGTAAAGATTGCAGATTTTGGAGTGAGTCATGTGGTGGAAGGTAGGTTAGAAGGAAATGAGTACGATGCAGGCACTTGTGCTTACATGAGTCCAGAAAGGATTGATCCAGAAAGATGGGGTGGTGAAAATGTAGATGAGTTTGCAGGAGATGTGTGGTCAATGGGAGTAGTAATGTTAGAATGTCTTTTGGGTTATTTTCCATTGATTGGAGCAGGGCAGAGACCAGATTGGGCAACTTTGATGTGTGCAATTTGCTTTGGTGAGAAGCTGGAGATGCCAGAAAAAGCATCACCAGAGTTTCAGAATTTTGTGAGGAGGTGTCTTGAGAAGAATTGGAGGAAGAGAGCAACAGTGTTAGAACTTCTGCATCACCCTTTTGTGAGTTAA	939	0.4111	MTLVIRERRHKQALRLSLPKSPSIPSSNSDSPHQIHVHSPPGIIKDLSHLEKREVLGHGNGGTVYKVYHKKTSSFYALKVLRLNENGFGIRQTAKLEADILKRVDSPYIVKCHAVFDSCDISFVMEYMEGGSLNDVLRIHHRLSEKVISVLGRRVLEGLRYLHGMNIVHRDIKPSNLLVNDKGEVKIADFGVSHVVEGRLEGNEYDAGTCAYMSPERIDPERWGGENVDEFAGDVWSMGVVMLECLLGYFPLIGAGQRPDWATLMCAICFGEKLEMPEKASPEFQNFVRRCLEKNWRKRATVLELLHHPFVS	312

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu7g03486	312	FunFam	Mitogen-activated protein kinase kinase 1	29	129	-	-
	Vimu7g03486	312	Gene3D	Transferase(Phosphotransferase) domain 1	44	312	-	-
	Vimu7g03486	312	SMART	serkin_6	50	311	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu7g03486	312	SUPERFAMILY	Protein kinase-like (PK-like)	25	311	IPR011009	-
	Vimu7g03486	312	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	167	179	IPR008271	GO:0004672\|GO:0006468
	Vimu7g03486	312	MobiDBLite	consensus disorder prediction	19	35	-	-
	Vimu7g03486	312	PANTHER	MITOGEN-ACTIVATED KINASE KINASE KINASE	26	311	-	-
	Vimu7g03486	312	ProSiteProfiles	Protein kinase domain profile.	50	311	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu7g03486	312	CDD	PKc_MAPKK_plant_like	48	311	-	-
	Vimu7g03486	312	PRINTS	Tyrosine kinase catalytic domain signature	233	255	IPR001245	GO:0004672\|GO:0006468
	Vimu7g03486	312	PRINTS	Tyrosine kinase catalytic domain signature	125	138	IPR001245	GO:0004672\|GO:0006468
	Vimu7g03486	312	PRINTS	Tyrosine kinase catalytic domain signature	161	179	IPR001245	GO:0004672\|GO:0006468
	Vimu7g03486	312	Pfam	Protein kinase domain	51	311	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu7g03486	312	ProSitePatterns	Protein kinases ATP-binding region signature.	56	79	IPR017441	GO:0005524
	Vimu7g03486	312	MobiDBLite	consensus disorder prediction	15	38	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu7g03486	Vimu-Chr7	29523212	29524180	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu7g03486	1	311	MAP Kinase Kinase Gene Family	AT1G32320	56.230	2.04e-112	326

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE7	Vimu7g03486		Pkinase	2.6e-61	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu7g03486	K20604		-	vra:106777505	608.216