Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03484 ATGAGCTTTCAGGACGTCGAGGCTGGACGGCCTTTCGCTTCCGGGCGCAACCTGATCAACGGCAAACAAGACCCTACGCAAGCGGTGGCTTCTGGCATATTTCAGATCAACACCGCCGTCTCCACGTTCCAGCGTCTCGTCAACACCCTCGGAACCCCCAAGGACACGCCCGAACTCCGCGAGAAGTTGCATAAGACAAGACTGCACATTGGACAATTGGTGAAGGATACTTCGAATAAACTTAAGCAAGCTAGTGAGATTGATCACAATGCTGAAGTTAATGCGAATAAGAAGATAGCAGATGCTAAGCTTGCAAAAGATTTTCAGGCGGTGTTGAAAGAGTTTCAGAAGGCTCAGCGTCTTGCAGCTGAGAGGGAAACAGCTTACACACCTTTTGTTCCACAAGCAGTTCTTCCATCCAGCTATACAGCTGGCGAAGCAGCCATTAGTTCTGATAAGACTCCTGAACAGAGGGCCCTTCTTGTGGAATCTAGAAGACAGGAAGTGTTATTCTTAGATAATGAGATTGCATTCAATGAGGCTATCATTGAGGAAAGAGAGCAAGGCATTCAAGAAATCCATCAGCAAATTGGTGAAGTGAATGAGATTTTCAAAGATCTTGCTGTGCTTGTCCATGAGCAAGGAACAATGATTGATGATATTGGGTCCAATATCGAGCATTCTCATGAAGCAACTGCACGAGCAAAATCTCAACTAGCCAAAGCATCAAAGACGCAAAGATCAAATTCATCTTTGACGTGCTTGCTTTTGGTGATATTTGGGATCGTGCTTCTAATCGTCATCATTGTCCTTGCTGCTTAG 822 0.4562 MSFQDVEAGRPFASGRNLINGKQDPTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSNKLKQASEIDHNAEVNANKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTAGEAAISSDKTPEQRALLVESRRQEVLFLDNEIAFNEAIIEEREQGIQEIHQQIGEVNEIFKDLAVLVHEQGTMIDDIGSNIEHSHEATARAKSQLAKASKTQRSNSSLTCLLLVIFGIVLLIVIIVLAA 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03484 273 CDD SNARE_Qa 183 241 - -
Vimu7g03484 273 Gene3D - 20 133 - -
Vimu7g03484 273 PANTHER SYNTAXIN 26 265 IPR045242 -
Vimu7g03484 273 FunFam Syntaxin-22 like 173 273 - -
Vimu7g03484 273 Pfam Syntaxin-like protein 30 129 IPR006011 GO:0016020
Vimu7g03484 273 ProSitePatterns Syntaxin / epimorphin family signature. 186 225 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vimu7g03484 273 SUPERFAMILY t-snare proteins 22 235 IPR010989 GO:0016020|GO:0016192
Vimu7g03484 273 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 180 242 IPR000727 -
Vimu7g03484 273 Pfam SNARE domain 216 268 IPR000727 -
Vimu7g03484 273 FunFam Syntaxin-22 like 20 133 - -
Vimu7g03484 273 CDD SynN 23 146 IPR006011 GO:0016020
Vimu7g03484 273 SMART tSNARE_6 175 242 IPR000727 -
Vimu7g03484 273 Gene3D - 174 273 - -
Vimu7g03484 273 SMART SynN_4 13 127 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03484 Vimu-Chr7 29514157 29517395 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03484 1 261 SNARE and Associated Proteins AT5G46860 78.544 3.96e-148 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03484 - - gmx:100810149 425.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03484 7 29514157 29517395 Vimu7g03484 7 29514157 29517395 ECH
Vimu7g03484 7 29514157 29517395 Vimu7g03484 7 29514157 29517395 PCT