Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03473 ATGGAACTTTTCCCAGCACAACCAGACTTGTCCTTACAAATCAGCCCTCCAAACGCCAAACCAACATCAACTTGGAGGAGAAGTACAGAAGAAGACATGGATTTGGGGTTTTGGAAGAGAGCCTTGGACTCAAGAAACTCCATATCATCAATGGCCAAACAAGACTCTTGCGTCGCCCTCTCCCTCTCCAATCCAAAAGCCTCCTCGGATAACTCCAACTCCTCTAGCCTCATTCACCACTTCCAAAACGGTGCCAATAATGCCACCACCAACCCCTTCCAACCCTTTCAGCCGAACCATTACTTCCACCAGCCACTGTTCCAGCCTCAGCACCAAAGCCTCAGCCAAGACCTCGGCTTTCTCAGACCCATTAGAGGAATCCCAGTGTACCAAAACCCTCCTCCTATACCATTCACTCAGCATCACCACCACCACCATCTCCCTCTAGACCCTTCAACCACCACCCCTTCTTCTATTATTTCCACCACCAACACTGCTTCTACCCCTTTCCACTCTCAGGCCCTTATGAGATCAAGGTTCTTGTCACGCTTCCCTGCTAAGCGTAGCATGAGGGCTCCCAGGATGCGTTGGACTTCTACCCTCCATGCTCGCTTTGTCCACGCCGTTGAACTCTTAGGTGGCCACGAAAGGGCTACACCCAAATCAGTTCTTGAGCTAATGGATGTGAAGGATCTCACTTTAGCACATGTCAAGTCTCATTTACAGATGTACCGGACGGTGAAAACTACAGATAGAGCTGCGGCTTCATCAGGGCAATCGGATGTGTATGATAATGGGTCGTCGGGAGATACTTCTGATGACTTAATGTTTGATATAAAATCTTCTCGAAGGTCTGATGTATCCATTAAACAGGGAAGATCAAGTGTTAATCAAGATAAGGATTATCATGGCCTTTGGGGCAACTCTTCCAGGGAAGCTTGGTTGCATGGGAAGACAAAGACTGATTCTGTTGGAAACGTGCCATCTCTTGAGAAGGAAATGGATCCGAAGTGTGTGAGTTATGAGAGAATATCAGATGGAAGCTCATCTTCAAATGTGTCAGGATCAAGCCCGAAGAAGGCTAATTTGGATTTGGAATTCAGCTTGGGGCAGCCACTTTAA 1122 0.4768 MELFPAQPDLSLQISPPNAKPTSTWRRSTEEDMDLGFWKRALDSRNSISSMAKQDSCVALSLSNPKASSDNSNSSSLIHHFQNGANNATTNPFQPFQPNHYFHQPLFQPQHQSLSQDLGFLRPIRGIPVYQNPPPIPFTQHHHHHHLPLDPSTTTPSSIISTTNTASTPFHSQALMRSRFLSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDVYDNGSSGDTSDDLMFDIKSSRRSDVSIKQGRSSVNQDKDYHGLWGNSSREAWLHGKTKTDSVGNVPSLEKEMDPKCVSYERISDGSSSSNVSGSSPKKANLDLEFSLGQPL 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03473 373 MobiDBLite consensus disorder prediction 317 336 - -
Vimu7g03473 373 MobiDBLite consensus disorder prediction 251 275 - -
Vimu7g03473 373 MobiDBLite consensus disorder prediction 138 157 - -
Vimu7g03473 373 SUPERFAMILY Homeodomain-like 190 246 IPR009057 -
Vimu7g03473 373 MobiDBLite consensus disorder prediction 1 29 - -
Vimu7g03473 373 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 8 372 IPR044847 GO:0000976|GO:0006355|GO:0010158
Vimu7g03473 373 MobiDBLite consensus disorder prediction 251 276 - -
Vimu7g03473 373 Gene3D - 192 249 - -
Vimu7g03473 373 MobiDBLite consensus disorder prediction 342 373 - -
Vimu7g03473 373 FunFam Myb family transcription factor 191 249 - -
Vimu7g03473 373 NCBIfam myb-like DNA-binding domain, SHAQKYF class 193 246 IPR006447 GO:0003677
Vimu7g03473 373 MobiDBLite consensus disorder prediction 343 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03473 Vimu-Chr7 29393045 29397458 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03473 1 372 G2-like Transcription Factor Family AT4G17695 38.520 4.88e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vimu7g03473 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03473 - - gmx:100798081 605.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03473 7 29393045 29397458 Vimu7g03473 7 29393045 29397458 ECH
Vimu7g03473 7 29393045 29397458 Vimu7g03473 7 29393045 29397458 PCT