Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03472 ATGGCCACCTCAACCCTACAATCTCTCTGCTTTCTTCTCCTTTTCACCCTCACTTCCACCGCCATCGCCGACGATGCGACGATCATGTCGAAACTCGCAAAAGCTTTGAGCCCCACGCTGTCGGAGTGGTCGGGGACGAACTTCTGTAGATGGAAGGGCGTTAGGTGCGCCAGCAACCGAGTCACTTCAATAAATATTGCTCCACAGTCGCTGACCGAAGTGCTACCTTCGGATCTTAACTCCCTTTCTCAACTTACCTCGTGCTCTCTCCAGGGCAACGCCCTCTTCGGCGCATTACCTTCCCTGGCCAACCTCTCAATGCTGGAGACCGTATTGCTCGGTGGCAACAACTTCACCTTCATTCTCGAGGGTTGCTTCCAGGGTCTCCAAAGCTTACGTAGCCTCAGCTTGGCAGACAGCCGCAACCTCGCTCCAAGGGTGATTCCCGCCGACTTGGCTCAGGCTTCCAATCTTGTCAAACTTGATCTCCAAGGTATAAATCTTAATGGTACCTTGTTGGATATATTTGACTCTCTTGTAAGTTTGAAGGAGCTCTTTCTTTCTTACAACAACCTTACTAGAAGTTTGCCAAAGAGCTTTGCAGTATCTGGAATTAAGAAGCTCTGGCTGAATAATCAAATACCAGAGTTCGTGGGCAACGCCCTCTCCGGCGCGTTACCTTCCCGGGCCAACCTCCCAATGCTGGAGACCGTATTCCTCGGTTGCAATAACTTCAATTTCATTCCCGAGGGTTGCTTCCAGGGTCTCCGAAGCTTACGTAGCTTCAGCTTGGCAGACAGCCGCAACCTCGCTCCATGGGCGATTCACGCCGACATGGCTCAGGCTTCCAATCTTGTCAAACTTGATCTCCAAGGTACAAATCTTAATGGTACCTTATCGGATATATTTGACTATCTTGTAAGTTTGAAGGAGCTCTTTCTTTTTTATAACAACCTTACTGGAAGTTTGCCAAAGAGCTTCGCAGTATCTGGGATTAAGAAGCTCTGGCTGAATAATCAAATACCAGAGTTCATGTTCAGGGGGTTATTGGGTAACATTGAGATAATTGCTTTCATGACTAATTTGTCTAAGGTTAGACTTGAGATGAATTTTTTCACAGGTCCAATTCCTGAATCATCAAATTGCATCACTTTGGTTGAATTGATCCTGAGTCACAACTACTTAACCGGTGTCATTCCATCTTCTCTCATGTCTCTTCTTAGTTTGAAGAAGATATCTTTAGATGACAATTATTTTCAGGGCTCATATCCTTCCTTTGGAATGGGTGTCAAGGCCAATGTAGATCATAATTCCTTTTGTACACATGAGCCTCAACCCTTAGATGGTATGGTAATAATCCTTGTTTCCATTAGATGTTACGAGGAGAACATTACTATTTTAGATTTGGCTAATCAGAATTTGAGCGGTACAATTTCACCTGCATTTGCTCAACTTGAGATTCTTGACGTGTCTCACAACAATTTATCTGGTAATATTCGAAAATTCTCATCTGAGGTGAAGTTGTACAGTAATTATAATTCTTTTCTTGGTGTGAGTAGAACTATTCCATCAAGTAGAGGTCCAAATGCACGTGATTTTTCACTGTCTCCCGGTTGGATTACCAATAACGTGCTTATAGGTATGGTTACTATTGTGGTGGTTGTGGTTAACAAAATGAAGAAAAGAATTGAGAGTGGTGGTAGCATGTCCATTGATATTATTCGGCGTGCAACTAAAGATTTCAATGAAGAAAATATAGTGGATTTAGATAATAATTGGAAAATTGCGGTGAAACGAATGAAATTTAATCCTTTGGAAAGTCAACAAATGAATGAATTGGAAGCTGAAATTGACTTTCTGAGTAAAGTGAGACACGAGCATTTGTTGAACTTTATAGGATATTGTTTTGAAGGCCAGGAAAAACTTTTAGTGTATGAGTATATGGCTCAAGGGACATTAGCTCAACACCTATTTTTTTGCAGTGAAAATGGTCGGGCTCCTTTAACTTGGAACTAA 2016 0.4271 MATSTLQSLCFLLLFTLTSTAIADDATIMSKLAKALSPTLSEWSGTNFCRWKGVRCASNRVTSINIAPQSLTEVLPSDLNSLSQLTSCSLQGNALFGALPSLANLSMLETVLLGGNNFTFILEGCFQGLQSLRSLSLADSRNLAPRVIPADLAQASNLVKLDLQGINLNGTLLDIFDSLVSLKELFLSYNNLTRSLPKSFAVSGIKKLWLNNQIPEFVGNALSGALPSRANLPMLETVFLGCNNFNFIPEGCFQGLRSLRSFSLADSRNLAPWAIHADMAQASNLVKLDLQGTNLNGTLSDIFDYLVSLKELFLFYNNLTGSLPKSFAVSGIKKLWLNNQIPEFMFRGLLGNIEIIAFMTNLSKVRLEMNFFTGPIPESSNCITLVELILSHNYLTGVIPSSLMSLLSLKKISLDDNYFQGSYPSFGMGVKANVDHNSFCTHEPQPLDGMVIILVSIRCYEENITILDLANQNLSGTISPAFAQLEILDVSHNNLSGNIRKFSSEVKLYSNYNSFLGVSRTIPSSRGPNARDFSLSPGWITNNVLIGMVTIVVVVVNKMKKRIESGGSMSIDIIRRATKDFNEENIVDLDNNWKIAVKRMKFNPLESQQMNELEAEIDFLSKVRHEHLLNFIGYCFEGQEKLLVYEYMAQGTLAQHLFFCSENGRAPLTWN 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03472 671 SUPERFAMILY Protein kinase-like (PK-like) 571 662 IPR011009 -
Vimu7g03472 671 PANTHER OSJNBA0070M12.3 PROTEIN 217 557 - -
Vimu7g03472 671 Gene3D Ribonuclease Inhibitor 217 447 IPR032675 -
Vimu7g03472 671 Gene3D Ribonuclease Inhibitor 24 216 IPR032675 -
Vimu7g03472 671 SMART LRR_typ_2 179 202 IPR003591 -
Vimu7g03472 671 SMART LRR_typ_2 232 255 IPR003591 -
Vimu7g03472 671 SMART LRR_typ_2 105 128 IPR003591 -
Vimu7g03472 671 SMART LRR_typ_2 306 329 IPR003591 -
Vimu7g03472 671 Pfam Protein tyrosine and serine/threonine kinase 590 657 IPR001245 GO:0004672|GO:0006468
Vimu7g03472 671 SUPERFAMILY L domain-like 278 520 - -
Vimu7g03472 671 Pfam Leucine rich repeat N-terminal domain 24 56 IPR013210 -
Vimu7g03472 671 Gene3D Phosphorylase Kinase; domain 1 586 649 - -
Vimu7g03472 671 Coils Coil 610 630 - -
Vimu7g03472 671 Gene3D Ribonuclease Inhibitor 452 530 IPR032675 -
Vimu7g03472 671 SUPERFAMILY L domain-like 34 339 - -
Vimu7g03472 671 ProSiteProfiles Protein kinase domain profile. 557 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03472 Vimu-Chr7 29367391 29370484 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03472 40 657 Receptor kinase-like Gene Family AT5G65700 25.722 1.31e-35 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vimu7g03472 PK_Tyr_Ser-Thr 3.9e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03472 K00924 - csv:101213513 326.635