Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03470 ATGAAATTGAAGATGAACCAAAAGGACAAGAATAGCCTTGGACATAGCACGAGGAGTGCACTATTTGCACCACCTAACTCAGAAACCATCATTCATAGAGACCTAAAACCCACAAACATACTTTTGGGGGATGATATGAGAGCTAAGATTGGAGATTTTGGTTTAGTAAAGATTATTACATCAGACGAAAATAGATCTAGCTTCACACGAGTGGCTGGAACAGTGGGATATTTGGATCCTGAATATATAGGTATATATAAAGCTTTTGAATACACGTTTGTACTCTTGAATACATGTTTGCCTTTACATGGTTTTATTAATTAA 324 0.358 MKLKMNQKDKNSLGHSTRSALFAPPNSETIIHRDLKPTNILLGDDMRAKIGDFGLVKIITSDENRSSFTRVAGTVGYLDPEYIGIYKAFEYTFVLLNTCLPLHGFIN 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03470 107 Gene3D Transferase(Phosphotransferase) domain 1 19 92 - -
Vimu7g03470 107 Pfam Protein kinase domain 27 85 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g03470 107 ProSiteProfiles Protein kinase domain profile. 1 107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g03470 107 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 28 83 - -
Vimu7g03470 107 MobiDBLite consensus disorder prediction 1 21 - -
Vimu7g03470 107 ProSitePatterns Serine/Threonine protein kinases active-site signature. 30 42 IPR008271 GO:0004672|GO:0006468
Vimu7g03470 107 SUPERFAMILY Protein kinase-like (PK-like) 27 86 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03470 Vimu-Chr7 29350630 29353099 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03470 13 89 Receptor kinase-like Gene Family AT3G45860 48.718 2.04e-17 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vimu7g03470 Pkinase 2.3e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03470 K00924 - pvy:116133542 78.9517