Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03469 ATGGCAGGGCTTTCTAGTGCTAGCCGTTCTTTAAATCCTGCTTTTGAGTTTGTCGAGAGGGTTTTGATCATTAGTGATGTAAAAGATAAACCCATTGAAAGAGAAGGATACAAAATCACTTCAGTACCTGTTGGGGTTGTATTAATTAAGGAGAAAACAGGTTTCAAGTTTACAACTAGAGTGCAGCCTTTTCGCCTTGCTGAATGGGATTCTGAAGACAAAGGCAACGCCCTCTCCGGCGCGTTACCTTCCCGGGCCAACCTCCCAATGCTGGAAGTATTCCTTGGTGGCAATAACTTCAATTTCATTCCCGAGGGGTACTTCCAGGGTCTCCGAAGCTTACGTAGCCTCAGCTTGGCAGAAAGCCGCAACCTCGTCCATGGACGATTCCCGCCGACTTGGCTCACGCTTCCAATCTTGTCAAACTTGATCTCCAAGGAGCTCTTTCTTTCTAACAACAACCTTACTGGAACTTTGCCAAAAAGCTTCGCAGTATCTCGGATTAAGAAGCTCTGGCTGAATAATCAAATACCGGAGTTCATGGCCAATGTGGATGGTAATTCCTTTTGTACACATGAGCCTCAACCCTATGATTCTCAAGTAATCATTTTACTTGATATTCTTAAACACTTTGGTTATCCCTATCGGTTCGCAAGTATATGGTATGGTAATAATCCTTGTTATCATTGGACTTCCATTAGATGTTACGAGGAGAAGATTACTATTGTAGATTTGGCTAATCAGAACTTGAGCGGTATAATTTCACTTGCATTCGGTTATTTATCTAATTTGAAAAACTTGTTTCTTAATGAAAATATATTGCAGGGATCAATACTGAAAACTTTGACTAATTTAGCTCAACTTGAGATTCTCGACGTGTCTCACAACAATTTATCTGGTAATATTCCAAAATTCTCATCTAAGGTGAAGTTGGGCAGTAATTATAATTGTTTTCTTGGTGTGAGTAGAACTATTCCATCAAGTGGAAGTCCAAATGCACGTGCTTTTTCACTGTCTCCCGGTTGGATTACCAATATCGTGCTTATAGGTATGGTTACTATTGTGGTGGTTGTGGTTGTGTTTTACATGTGCCATGCAAAAAGAACAAAAAGAATTGAGAGTCGTGGTACCATGTCCATTGATATTATTCGACGTGCAACTAAAGATTTCAATGAAGAAAATATAGTGGGAAAACTTTTGGTGTATGAGTATATGGCTCAAGGGACATTAGCTCAACACCTATTTTCTTGCAGTGAAAATGGTCGGGTTCCTTTAACTTGGAACCAAAGGACAAGAATAGCCTTGGACGTAGCACGGCGAGTGCACTATTTGCACAACCTAACTCAGGAAACCATCATTCATAGAGAGCTAAAAACCACAAACATACTTTTGGGGGATGATATGAGAGCTAAGATTGAAGATTTTTGTTTAGTAAAGATTATTACATCAGACGGAAACAGATCTAGCTTCACACGAGTGGCTGGAACAGTGGGATATTTGGATCCTGAATATATAGGAATATATAAAGCTTTTAAATACATAGATTCAGCATCATGTGGCATGGGATTCCATGGCAATGCCGATGTCATTTCCAAACGAAAGGTGGATAAGTTTGCCACAAATGACCTGGATTGGACTGAAACAATTCTAGAGTGTCCTGTGTATTCTCCAACAAAGGAGGAATTTGAGGATCCTTTGGTTTATTTGCAAAAGATAGCTCTAGAAGCTTCTAAATATTGTATTGAGTTTTCAGTTAGCCCTTCTTTAAATCCTGCTTTTGAGTTTGTTGAGAGGGTTTTGATCATTAGTGATGTAAAAGATAAACCCATTGAATGA 1836 0.3949 MAGLSSASRSLNPAFEFVERVLIISDVKDKPIEREGYKITSVPVGVVLIKEKTGFKFTTRVQPFRLAEWDSEDKGNALSGALPSRANLPMLEVFLGGNNFNFIPEGYFQGLRSLRSLSLAESRNLVHGRFPPTWLTLPILSNLISKELFLSNNNLTGTLPKSFAVSRIKKLWLNNQIPEFMANVDGNSFCTHEPQPYDSQVIILLDILKHFGYPYRFASIWYGNNPCYHWTSIRCYEEKITIVDLANQNLSGIISLAFGYLSNLKNLFLNENILQGSILKTLTNLAQLEILDVSHNNLSGNIPKFSSKVKLGSNYNCFLGVSRTIPSSGSPNARAFSLSPGWITNIVLIGMVTIVVVVVVFYMCHAKRTKRIESRGTMSIDIIRRATKDFNEENIVGKLLVYEYMAQGTLAQHLFSCSENGRVPLTWNQRTRIALDVARRVHYLHNLTQETIIHRELKTTNILLGDDMRAKIEDFCLVKIITSDGNRSSFTRVAGTVGYLDPEYIGIYKAFKYIDSASCGMGFHGNADVISKRKVDKFATNDLDWTETILECPVYSPTKEEFEDPLVYLQKIALEASKYCIEFSVSPSLNPAFEFVERVLIISDVKDKPIE 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03469 611 Pfam jmjN domain 553 579 IPR003349 -
Vimu7g03469 611 SUPERFAMILY Protein kinase-like (PK-like) 391 520 IPR011009 -
Vimu7g03469 611 PANTHER OSJNBA0070M12.3 PROTEIN 74 180 - -
Vimu7g03469 611 Gene3D Cupin 535 601 - -
Vimu7g03469 611 SMART serkin_6 343 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g03469 611 ProSiteProfiles JmjN domain profile. 552 593 IPR003349 -
Vimu7g03469 611 Gene3D Ribonuclease Inhibitor 73 191 IPR032675 -
Vimu7g03469 611 FunFam Os07g0541700 protein 405 496 - -
Vimu7g03469 611 Gene3D Ribonuclease Inhibitor 199 320 IPR032675 -
Vimu7g03469 611 FunFam Leucine-rich repeat receptor-like kinase 199 322 - -
Vimu7g03469 611 Gene3D Transferase(Phosphotransferase) domain 1 363 524 - -
Vimu7g03469 611 ProSiteProfiles Protein kinase domain profile. 303 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g03469 611 Pfam Leucine rich repeat 240 298 IPR001611 GO:0005515
Vimu7g03469 611 SMART JmjN_1 551 585 IPR003349 -
Vimu7g03469 611 Pfam Protein kinase domain 399 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g03469 611 SUPERFAMILY L domain-like 215 307 - -
Vimu7g03469 611 SUPERFAMILY L domain-like 92 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03469 Vimu-Chr7 29347464 29350551 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03469 385 610 Receptor kinase-like Gene Family AT1G11050 31.535 1.22e-25 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vimu7g03469 Pkinase 1.3e-15 CL0016
TR Jumonji Vimu7g03469 Pkinase 1.3e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03469 K00924 - gmx:100783655 182.185