Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03453 ATGGCACCACCAATAACGGACTCGGAACCAGAATCCGAAGCGTTGCGCCTCAAGGCCATGGCGGAGTCCAAGTTCAAAGCCTCCAACAACGCCAAATCTGCTCTCAAATACGCGAAGCGTGCGCAGCGTCTGTGCCCGCACCTCGACGGCGTGTCGGAGGCCGTCACTTCGCTCACTGTCCTCGCCGCGTCGGACTGGTATAGTGCGCTCGGTGCTGAGCCCTTTGCAAACAGCAGCGTCATTCGGAGACAGTACAAGAAACTCGCACTGCTCCTCCATCCCGACAAGAACCCCAACGTGGCGTCCGAGGAGGCCTTCAAGCTCGTCGGCGAGGCCTTCCACTTCCTTTCCGACCGGAGTCGCCGCCGAGAGTACGATGCCGAGCTCCGGCAGAAGATCAAGGCGGAGAGCGAGACGTTCTGGACCGCCTGCTCCACTTGCAGGCTCCTTCACCAGTTCCAGAGAAAGTATATGGGTCAAGAATTGGTGTGTCCGAGTTGTGAGAAGAGTTTTAAGGCTGTGGAAACGGTTCAGAGTGATGGGGATGGTGATGGGGAAGGTAGGGTTAGGAGTATGAGGTTGAAGTTAAAAGAGATAAATAAGAAGGAGAAAATTGGTGTGAAAGGGAAAGTGGATAATGAAGTGGGGGATGAGAAGGAAGGGAAATTGAGGAAGAGAATGCGTTCAGTTGGGGAGGTGTTGGAGAGGTCCAAACCTAGTAAAAGGGTTAAAAATGGGGAGGAAATGATGACATTAGCTGAATTTCAGACTGAGGTGAGGAGAAAGTTGCAGGAAAAAAAGTTGAAGGAAAAAGAAAAGGAAAAGGAGGATGATAGAATTGAGAAGAGGAGCAACCGGGGGGAGAGGCGGCGGACATTGAAAAACTCTGAAGGTTTAGAGGTTGGAGAGGGGAGGGCTTTGAAGAAGAGTGTGAGGCTTGGGATTGAGGAGAGTCTTGTGGGTTTATCGAAGAGAAAGGGGTTGAGATCTGCGAGGCATAGGGATTCTGATAAAGGGGAGTCGGAAAACATGGCGGTGGTGGATTCAGATTTTTATGATTTTGACAAAGATAGAGTGGAGAAGAGTTTTAAGAAAGGTCAAGTGTGGGCAGTGTATGACGATGATGATGGAATGCCAAGAAATTATGCCCTGATTGATGAAACTCTTTCACTGAATCCTTTTGAAGTGAGATTAAGTTGGTTGGATGTACAGATCAGTGGGGATGGGAGGATAGTTAGTAGGGAGAGAATGGGGTTTCATACACCTTGTGGTAGATTTAAGGTTGCCAGGAAGACTTCGGTGAATTCGGTAAATATATTTTCCCATGTTGTGGATTGTGACCGGGCAGCACGTGAACTTTACAAAATTTACCCCAAGAAAGGCTCGGTATGGGCGCTGCATGGCGAGGGAAGTATTGATGCAGAGGACCGCAAGAGATGCTATGACATTGTTGTATGTCTAACAAGTTACAATGAGTCAAATGGTCTGAGCATGGCGTATCTTGAGAAGGTTGAGGGTTACAAGACAGTATTTAGGCGGCAAAAGAAGGGGAGTGGTGCTATTATATTTCTTGGGAAGGATGAATTGTGCTTAGTTTCTCATCAAATTCCAGCACGGAAGCTTATTTGTGATGAAACTCCTGAACTGTTGAAAGACTGTTGGGAACTTGATCCCGCATCACTTCCTTCAGATTTACTTACTATTGGTGGCATTGATAACTGA 1722 0.4814 MAPPITDSEPESEALRLKAMAESKFKASNNAKSALKYAKRAQRLCPHLDGVSEAVTSLTVLAASDWYSALGAEPFANSSVIRRQYKKLALLLHPDKNPNVASEEAFKLVGEAFHFLSDRSRRREYDAELRQKIKAESETFWTACSTCRLLHQFQRKYMGQELVCPSCEKSFKAVETVQSDGDGDGEGRVRSMRLKLKEINKKEKIGVKGKVDNEVGDEKEGKLRKRMRSVGEVLERSKPSKRVKNGEEMMTLAEFQTEVRRKLQEKKLKEKEKEKEDDRIEKRSNRGERRRTLKNSEGLEVGEGRALKKSVRLGIEESLVGLSKRKGLRSARHRDSDKGESENMAVVDSDFYDFDKDRVEKSFKKGQVWAVYDDDDGMPRNYALIDETLSLNPFEVRLSWLDVQISGDGRIVSRERMGFHTPCGRFKVARKTSVNSVNIFSHVVDCDRAARELYKIYPKKGSVWALHGEGSIDAEDRKRCYDIVVCLTSYNESNGLSMAYLEKVEGYKTVFRRQKKGSGAIIFLGKDELCLVSHQIPARKLICDETPELLKDCWELDPASLPSDLLTIGGIDN 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03453 573 Coils Coil 252 283 - -
Vimu7g03453 573 PRINTS DnaJ domain signature 101 121 IPR001623 -
Vimu7g03453 573 PRINTS DnaJ domain signature 67 85 IPR001623 -
Vimu7g03453 573 PRINTS DnaJ domain signature 85 100 IPR001623 -
Vimu7g03453 573 MobiDBLite consensus disorder prediction 266 297 - -
Vimu7g03453 573 Pfam DnaJ domain 65 126 IPR001623 -
Vimu7g03453 573 CDD DnaJ 65 118 IPR001623 -
Vimu7g03453 573 Pfam Domain of unknown function (DUF3444) 341 542 IPR024593 -
Vimu7g03453 573 ProSiteProfiles dnaJ domain profile. 65 129 IPR001623 -
Vimu7g03453 573 SMART dnaj_3 64 121 IPR001623 -
Vimu7g03453 573 SUPERFAMILY Chaperone J-domain 58 130 IPR036869 -
Vimu7g03453 573 PANTHER BNAC03G44070D PROTEIN 11 562 - -
Vimu7g03453 573 Gene3D DnaJ domain 52 147 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03453 Vimu-Chr7 29166566 29172992 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03453 5 178 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 30.732 1.95e-21 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03453 - - ccaj:109800659 858.596
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03158 7 26744478 26748929 Vimu7g03453 7 29166566 29172992 PCT