Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03434 ATGGGTTATGAAATGAAGGATCTTTTCAAGATAGGGAAGAAAAAGAAGAAGAATGAGAGAAGTCCGACGAAAATAGCATTATTAGTAGAGAATGTGATGGCTGAACTTGAGGTTACAGCCGAAGAAGATGTAGATCTTAATAGGCAAGGGAAACCTGCCATTAATAAACTCAAGAAGTTGCCTCTTTTGACAGAAGCCCTCTCGAAGAAGAAGCTACAACTAGAATTTTTAGATTATGGAGTCCTGACTATATTGAAGAATTGGCTTCAGCCACTTCCTGATGGGAGCTTACCCAATATAAATATACAGACGGAAATTTTGAAGATATTGAATGATTTTCCTATAGACCTAGAGCAATATGATAGAAGAGAACAATTGAAGGAGAGTGGCTTTCGAAAAGTCATTATGTTTTTATCAAAATCGGATGAAGATTTAAGTGTAAATCGAAAATTAGCGAAGGAGCTGGTTGACAAGTGGAGCCGGGCTATATTTAATGATATCCGATTTGCAAACATGAGAAATAGAGAGGATTGCAGGGTTCCTTCTAGGACATCATCGCCAAACAAACCTAAATCTGGACAGTCTTCCTCCAGACAGAAGATCAATAAAACATTGCATCAGTTAAGGACATCCAGAAAAACACCTCTTCAAGCTATAAAATTAAGTGTGGATGGTCGTCGCGAATGGAGAAGAGTAACGGAGGGGCTTGCAGCGGCTTCCGTGATGTTGGCATCGTGCTTTAGTGTGGTGACGCAAAAACGATTTGGGATGGTGCTGCGATGA 783 0.3985 MGYEMKDLFKIGKKKKKNERSPTKIALLVENVMAELEVTAEEDVDLNRQGKPAINKLKKLPLLTEALSKKKLQLEFLDYGVLTILKNWLQPLPDGSLPNINIQTEILKILNDFPIDLEQYDRREQLKESGFRKVIMFLSKSDEDLSVNRKLAKELVDKWSRAIFNDIRFANMRNREDCRVPSRTSSPNKPKSGQSSSRQKINKTLHQLRTSRKTPLQAIKLSVDGRREWRRVTEGLAAASVMLASCFSVVTQKRFGMVLR 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03434 260 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 22 167 IPR035441 -
Vimu7g03434 260 PANTHER PROTEIN IWS1 HOMOLOG 1 4 194 IPR044204 GO:0009742|GO:0032784
Vimu7g03434 260 Pfam TFIIS helical bundle-like domain 108 163 IPR017923 -
Vimu7g03434 260 MobiDBLite consensus disorder prediction 177 201 - -
Vimu7g03434 260 ProSiteProfiles TFIIS N-terminal domain profile. 83 166 IPR017923 -
Vimu7g03434 260 MobiDBLite consensus disorder prediction 183 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03434 Vimu-Chr7 29019335 29021787 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vimu7g03434 Med26 3.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03434 K17498 - gmx:100801805 301.982