Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03433 ATGGGTTACGAAGACGATCCGTACCGCGACGAGGACGGTGAGCCCTTAATGGATTACGATGACATTCAATCCGACCGCGAGCCTTCTCCGGAGCCGCGCCACCAGCTCGATGAGTACGAGGATGATGTCAACGAGTGGCAGGGCCGGGATCGGTCGCAGACGCCGGTGTACGACAACGATTCAGCGCGGTCGAAGCCGCGGAAGAGGCTGATCAAGAAGAGCGATGCTGGGAAGCAGTCGGTGGCGCCGGAGCTCGAGGATGAGGATGAGGGATATCTTCCTGAGGCGAGGTTTGACGAGGGGGATGGGAGGAAGAGGAAGAAGGGAAAAGAGATTGGGAGTGGGAAGAAGGAAAAGAGGCTGAAGGGTGAGAAGAGATTTGGTGGTGGCAGTGGCTCTAAATTTGGGGGTTCTAAAAAAGGTTTAGGTGGTAAGGCTGGGAAGGATCACGATGGGGAAGTTAAGGAAATGTGGGATACCATTGCCGGGGGAGATTCTGAGGATGATCACGAGGGTGTCAGGAATCTTGATGATGACAACTTCATAGACGACACTGGGGTGGAACCTGCTTATTATGGCAGTGATGAACCACGTTCTCCTGGCGATGCTCCTCAGGCAGAGGAAGGTGAAGAGGATGAAGAGATCAAGGATCTTTTCAAGACAGGGAAGAAAAAGAAAAAGAACGAGAGAAGTCCGGCTGAGATAGCATTATTAGTGGAGAATGTCATGGCTGAACTTGAGGTTACCGCGGAAGAAGATGCAGATCTTAATAGGCAAGGGAAACCTGCCATTAATAAACTCAAGAAGTTACCTCTTCTCACAGAAGTCCTCTCGAAGAAACAACTTCAACTAGAGTTTTTAGATCATGGAGTGCTAACTTTATTAAAGAATTGGCTTGAGCCACTCCCTGATGGAAGTTTACCTAATATAAATATACGCACGGAAATTTTGAGGATATTGAATGATTTTCCTATAGACCTAGAGCAATATGATAGAAGGGAACAATTGAAGAAGAGTGGTCTTGGAAAAGTCATTATGTTTTTATCGAAATCTGATGAAGAAATAAGTCTAAACAGAAAACTAGCTAAGGAGCTGGTTGACAAGTGGAGCCGGCCTATATTTAATAAGAGTACCCGATTTGAAGACATGAGAAATGTAGAGGATGACAGAGTTCCTTTCAGGAGACCATCGCTAAAGAAGCCAACTAATAAAGCTGCAGGAATATCGAGAGATAGCGATCTTGATCTGGAACTTTCGCAACCTAAGGGTGGACAGTCCTCCTCCAGGCAGCACGCTTCGAGGCCGGAAGCGACACCTTTAGATTTTGTCATACGACCCCAGTCTAAAATTGATCCAGAAGAGATTAGAGCTCGGGCAAAACAAGCTGCTCAAGACCAGCAGCGTATGAAGATGAATAAAAAGTTGCAGCAGTTAAGGGCACCCAAAAAGAGGCAGCTTCAGGCTACAAAATTAAGTGTGGAGGGTCGTGGAATGGTCAAGTATTTGTAA 1509 0.4698 MGYEDDPYRDEDGEPLMDYDDIQSDREPSPEPRHQLDEYEDDVNEWQGRDRSQTPVYDNDSARSKPRKRLIKKSDAGKQSVAPELEDEDEGYLPEARFDEGDGRKRKKGKEIGSGKKEKRLKGEKRFGGGSGSKFGGSKKGLGGKAGKDHDGEVKEMWDTIAGGDSEDDHEGVRNLDDDNFIDDTGVEPAYYGSDEPRSPGDAPQAEEGEEDEEIKDLFKTGKKKKKNERSPAEIALLVENVMAELEVTAEEDADLNRQGKPAINKLKKLPLLTEVLSKKQLQLEFLDHGVLTLLKNWLEPLPDGSLPNINIRTEILRILNDFPIDLEQYDRREQLKKSGLGKVIMFLSKSDEEISLNRKLAKELVDKWSRPIFNKSTRFEDMRNVEDDRVPFRRPSLKKPTNKAAGISRDSDLDLELSQPKGGQSSSRQHASRPEATPLDFVIRPQSKIDPEEIRARAKQAAQDQQRMKMNKKLQQLRAPKKRQLQATKLSVEGRGMVKYL 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03433 502 MobiDBLite consensus disorder prediction 447 463 - -
Vimu7g03433 502 PANTHER PROTEIN IWS1 HOMOLOG 1 1 502 IPR044204 GO:0009742|GO:0032784
Vimu7g03433 502 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 232 379 IPR035441 -
Vimu7g03433 502 MobiDBLite consensus disorder prediction 1 214 - -
Vimu7g03433 502 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 288 376 IPR035441 -
Vimu7g03433 502 MobiDBLite consensus disorder prediction 392 482 - -
Vimu7g03433 502 ProSiteProfiles TFIIS N-terminal domain profile. 293 376 IPR017923 -
Vimu7g03433 502 MobiDBLite consensus disorder prediction 19 48 - -
Vimu7g03433 502 MobiDBLite consensus disorder prediction 143 181 - -
Vimu7g03433 502 MobiDBLite consensus disorder prediction 419 434 - -
Vimu7g03433 502 Pfam TFIIS helical bundle-like domain 320 373 IPR017923 -
Vimu7g03433 502 MobiDBLite consensus disorder prediction 1 18 - -
Vimu7g03433 502 MobiDBLite consensus disorder prediction 96 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03433 Vimu-Chr7 29008654 29011248 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vimu7g03433 Med26 5.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03433 K17498 - gmx:100801805 818.92