Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03412 ATGGGTCGGAAACACGACGCCGTTTTGGTCGACAAACCAGTCGCCGAAGAAGCACCCTACAGCCCCGAGCTCGATTCCGAGAAGAAGAAGAAGAAGAAAAAGAAGAACAAGAACAAAGACAAGCAGCAAGAAAGCGAAAACAGCCCCAAACGAAAGCTCGACGAACTCGACCCGGGAAACGGCACCGAATCGAAGAAGAAGAAAAAGAAGAAACACCACGACTCCAAAGAAAATGCAGGGGAAACCAACGGTGATAGAAACAACGACAACGGCGCTAATCGCGATGAAACGGTAGCGGACGGGTCTGTAGTGGTTACTGGAAAGAATGCCGGAGATGCGAAGTACGCGGCGGTGAAAAGCTTTTCGGATTCGGGACTGCCGGAGAATGTGCTGGAATGTTGCAAGGGTTTCGAGAAGCCTTCTCCAATTCAATCGCGGGCGTGGCCTTTCTTATTGGACCGCCGTGATTTGATTGGAATCGCTGCCACTGGATCAGGGAAAACGTTGGCGTTCGGGATACCGGCGATTATGCATGTTTTGGGAAAGCGGAAGGGTAAAGGTTCCAGGGGACGGAACCCTCTTTGCCTCGTGCTCTCTCCTACTCGAGAGCTAGCACAACAAATATCAGATGTCATCTGTGATGCGGGTAGTTCTTGTGGTGTGGAATCAATCTGTTTGTATGGTGGAACCTCCAAAGGCCCACAAATCTCCTCACTAAAATCTGGCATGGACATTGTCATTGGAACTCCTGGTCGTATTCAGGATCTAATTGAAATGGGTGTCTGTTGCCTCAAAGAAGTATCTTTTGTGGTACTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAGCAAATAGTCCGCTCTATACTGGGTCAGACAAGTTCTGATCGTCAAATGGTTATGTTCAGTGCTACATGGCCTTTGGCAGTTCATCACTTGGCTCAGGAGTTTATGGATCCCAATCCTGTAAAAGTTGTTGTAGGTTCAGAAGACTTGGCTGCCAATCATGATGTCATGCAGATAGTTGAGGTCTTGGATGATCGTGCTCGTGATAGGCGCCTGGTTGCTTTACTGGAAAAGTACCACAAATCTCAAAGCAATCGAGTATTGGTCTTTGTTTTGTACAAAAATGAAGCCAAACGAGTTGAAAATATGCTTCAAGAAGGGGGTTGGAAGGCTGTTTCAATACATGGGGACAAAGCTCAACATGATCGCACAAAGGCACTCTCATTGTTCAAAAAGGGAAGCTGTCCTTTAATGGTTGCTACTGATGTGGCTGCACGGGGATTGGATATTCCAGATGTTGAAGTAGTGATAAACTATAGTTTTCCTCTGACCACAGAAGATTATGTTCATAGAATTGGGCGGACTGGACGAGCTGGTAAGAAAGGTGTTGCCCATACATTCTTCACACAGCAGAATAAGGGACTTGCTGGGGAGCTGGTGAATGTTTTGAGGGAAGCAGGGCAAGTCGTACCCGATGACCTCCTGAAATTTGGCACACATGTAAAGAAAAAGGAGTCCAAGCTTTACGGGGCGCACTTCAAGGAAATCCCTGTTGATGCTCCAAAGTCTCAAAAGAAAACATTTGACGACTCTGACGATGAATGA 1614 0.4696 MGRKHDAVLVDKPVAEEAPYSPELDSEKKKKKKKKNKNKDKQQESENSPKRKLDELDPGNGTESKKKKKKKHHDSKENAGETNGDRNNDNGANRDETVADGSVVVTGKNAGDAKYAAVKSFSDSGLPENVLECCKGFEKPSPIQSRAWPFLLDRRDLIGIAATGSGKTLAFGIPAIMHVLGKRKGKGSRGRNPLCLVLSPTRELAQQISDVICDAGSSCGVESICLYGGTSKGPQISSLKSGMDIVIGTPGRIQDLIEMGVCCLKEVSFVVLDEADRMLDMGFEQIVRSILGQTSSDRQMVMFSATWPLAVHHLAQEFMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRARDRRLVALLEKYHKSQSNRVLVFVLYKNEAKRVENMLQEGGWKAVSIHGDKAQHDRTKALSLFKKGSCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTQQNKGLAGELVNVLREAGQVVPDDLLKFGTHVKKKESKLYGAHFKEIPVDAPKSQKKTFDDSDDE 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03412 537 Pfam DEAD/DEAH box helicase 142 310 IPR011545 GO:0003676|GO:0005524
Vimu7g03412 537 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 271 279 IPR000629 -
Vimu7g03412 537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 475 IPR027417 -
Vimu7g03412 537 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 48 497 - -
Vimu7g03412 537 MobiDBLite consensus disorder prediction 39 64 - -
Vimu7g03412 537 Gene3D - 329 504 IPR027417 -
Vimu7g03412 537 Gene3D - 59 328 IPR027417 -
Vimu7g03412 537 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 354 501 IPR001650 -
Vimu7g03412 537 SMART ultradead3 136 342 IPR014001 -
Vimu7g03412 537 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 148 325 IPR014001 -
Vimu7g03412 537 Coils Coil 24 44 - -
Vimu7g03412 537 MobiDBLite consensus disorder prediction 74 93 - -
Vimu7g03412 537 CDD DEADc 135 326 - -
Vimu7g03412 537 FunFam ATP-dependent RNA helicase RhlB 328 505 - -
Vimu7g03412 537 MobiDBLite consensus disorder prediction 1 102 - -
Vimu7g03412 537 Pfam Helicase conserved C-terminal domain 353 462 IPR001650 -
Vimu7g03412 537 SMART helicmild6 381 462 IPR001650 -
Vimu7g03412 537 CDD SF2_C_DEAD 339 471 - -
Vimu7g03412 537 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 119 145 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03412 Vimu-Chr7 28780928 28785820 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03412 118 470 Eukaryotic Initiation Factors Gene Family AT3G19760 33.239 3.50e-56 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03412 K14811 - gmx:100806057 925.235