Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03410 ATGGCAGCTTGCACTGTGTACTCAACTCAATCTCTCAGCACAAATTGCTCCATCTCAACCCCATCAAAAACACAACTGAGTTTTCACCAAAAGCAGGTAGTATTCTACACCACAAGCAGGAGGAACAGCAAGAGGGGCATCAACAGTGCCAGAAGCTATGTGATAACATGTGCAGCAAGTGACCAACAGACAGTGGTGATTGGTCTGGCTGCTGACTCAGGTTGTGGAAAAAGTACCTTCATGAGGAGGCTCACCAGTGTGTTTGGAGGAGCAGCAGAACCACCAAAGGGTGGCAACCCTGATTCCAACACTCTCATCAGTGACACCACCACAGTCATATGCTTGGATGATTACCACTCATTGGATAGAACTGGCAGAAAGGAGAAGGGAGTCACTGCCCTCGACCCCAGAGCCAACGATTTTGATCTCATGTATGAACAAGTTAAAGCAATCAAAGATGGAATTGCTGTTCAAAAACCAATCTACAACCATGTCACTGGTCTCTTGGACCCCCCCGAGCTCATCAAACCTCCCAAAATCTTAGTCATTGAAGGTTTGCACCCAATGTTTGATTCCCGTGTCAGAGACCTCTTGGACTTTAGCATCTACCTAGACATTAGCAATGAGGTGAAATTCGCTTGGAAAATTCAGAGAGACATGGCAGAGCGTGGACACAGTCTTGAAAGCATCAAGGCTAGCATTGAAGCAAGAAAGCCTGATTTTGAAGCATATATTGATCCACAAAAGCAATATGCAGATGCTGTGATAGAAGTGTTGCCAACTCAACTGATTCCAGATGACAATGAGGGTAAGATTTTAAGAGTGAGGTTGATACAGAAAGAAGGAGTTAATTTCTTCAGTCCAGTTTATTTGTTCGATGAGGGCTCTACCATTTCATGGATACCATGTGGAAGGAAGCTTACATGCTCCTACCCTGGCATCAAATTCTCCTATGGACCAGACACTTACTACGGAAATGAGGTGTCAATTGTAGAAATGGATGGACAGTTTGACAGATTAGATGAACTAATATACGTTGAGAGTCACCTAAGCAACCTTTCTACCAAGTTCTATGGAGAAGTTACTCAACAGATGTTGAAGCATGCTGATTTCCCCGGCAGCAACAATGGCACAGGTCTCTTCCAAACCATAGTTGGTTTGAAGATAAGAGATCTATATGAACAGATAGTAGCCACCAGGGCTGAGACTCCTGTAGCTGCAAAAGCTTAG 1230 0.4431 MAACTVYSTQSLSTNCSISTPSKTQLSFHQKQVVFYTTSRRNSKRGINSARSYVITCAASDQQTVVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKAIKDGIAVQKPIYNHVTGLLDPPELIKPPKILVIEGLHPMFDSRVRDLLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFEAYIDPQKQYADAVIEVLPTQLIPDDNEGKILRVRLIQKEGVNFFSPVYLFDEGSTISWIPCGRKLTCSYPGIKFSYGPDTYYGNEVSIVEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIVATRAETPVAAKA 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03410 409 FunFam Phosphoribulokinase 61 291 - -
Vimu7g03410 409 CDD PRK 66 355 - -
Vimu7g03410 409 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 334 IPR027417 -
Vimu7g03410 409 PRINTS Phosphoribulokinase family signature 180 198 IPR006082 GO:0005524|GO:0005975|GO:0008974
Vimu7g03410 409 PRINTS Phosphoribulokinase family signature 215 232 IPR006082 GO:0005524|GO:0005975|GO:0008974
Vimu7g03410 409 PRINTS Phosphoribulokinase family signature 71 88 IPR006082 GO:0005524|GO:0005975|GO:0008974
Vimu7g03410 409 PRINTS Phosphoribulokinase family signature 233 256 IPR006082 GO:0005524|GO:0005975|GO:0008974
Vimu7g03410 409 PANTHER URIDINE KINASE 49 311 - -
Vimu7g03410 409 Gene3D - 61 301 IPR027417 -
Vimu7g03410 409 Pfam Phosphoribulokinase / Uridine kinase family 66 264 IPR006083 GO:0005524|GO:0016301
Vimu7g03410 409 ProSitePatterns Phosphoribulokinase signature. 215 228 IPR006082 GO:0005524|GO:0005975|GO:0008974
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03410 118 292 PRT Gene Family AT3G27440 25.281 1.28e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03410 K00855 - gmx:100807126 771.926