Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03407 ATGTCTGCAAACGTAAACTACGGCATGCCCCTCACTCACCCTCACTGGTTCTCATCAAAATCTGGAATTTACCATAGCAAGCATGCCCCTGTGGACCTTCCCAGCGACCCTTTTCTCGATGTTGTCTCCTTCATTTTTTCCCACCGCCATGATGGGGTATCGGCCCTCGTTGATTCTTCATCAGGGTGTTCCATTTCCTACTTAAAGTTGCTACCTTTGGTCAAATCCGTTGCCTCTGGTCTTCATAAAATGGGTGTTTCGCAAGGTGATGTGGTTCTGATTCTTCTTCCAAATTCCATTTACTATCCCATTGTGTTCTTAGGCGTTCTCTATCTAGGAGCTATCTTCACATCGTTGAACCCTCTTAGTAGTGTCCATGAAATACGCAGACAGGTTGCTGAGTGTGGTGTGAGTTTGGCTTTTACTGTGCCTGAAAATTTTAAGAAACTAGAGCCATTGGGAATTTCTGTTATTGCTGTGCCAGAAAATGAGAAGGGTTTGAGACATGGTTGTTTTTCATGCTTTTGTTACTTGATTTCTTGTGACTTCGATTTGCCTCAGAAGCCTGTTATCAAGCAGGATGACACTGCTGGGATATTGTATTCTTCTGGTACTACTGGGGTGAGCAAAGGGGTCGTTCTGTCCCATAAAAATCTTATTGCTATGGTTGAGCTTTTTGTGAGGTTTGAAGCTTCTCAATATAAATGCTCTTGCTTGAGAAATGTGTATCTGGCTGGTTTGCCAATGTTCCATGTGTATGGCTTGTCGCTTTTTGCTGTGGGATTGTTGTCTTTGGGTTCTACTATCGTTGTGATGAGGAAATTTGACATAGATGAAGTTGTCAGGGTGATTGATGAATATAAAGTCACCCACTTTCCTGTTGTTCCGCCGATGTTGACAGCATTGATAACGAGGGCAAATGGTGTTAATGACTGTAAGTTGCAGAGTTTGATACAGGTCTCCTGTGGTGCAGCGCCTTTGAGCTCAGGAGTTGTTGATGATTTTCTCCGAACTTTTCCCGCTGTTGATTTTATACAGGGTTATGGAATGACTGAGTCAGCAGCCGTAGGAACACGTGGCTTCAATACTGAAAAGTTTCGAAATTATTCCTCAATAGGGTTATTGGCTCCAAACATGGAGGCAAAAGTGGTAGACTGGAATACTGGTTCATTTTTGCCCCCTGGCAGCAGTGGGTACTTGAATAATGAAGAAGCTACAATGTCTACAATTGATAGAGATGGTTGGCTACATACTGGAGATGTTGTTTATTTTGATAATGATGGATACTTATACATAGCTGATCGATTGAAAGATATCATCAAATACAAGGGCTTTCAGGTATCTAATTTTAAATTTTAG 1359 0.4202 MSANVNYGMPLTHPHWFSSKSGIYHSKHAPVDLPSDPFLDVVSFIFSHRHDGVSALVDSSSGCSISYLKLLPLVKSVASGLHKMGVSQGDVVLILLPNSIYYPIVFLGVLYLGAIFTSLNPLSSVHEIRRQVAECGVSLAFTVPENFKKLEPLGISVIAVPENEKGLRHGCFSCFCYLISCDFDLPQKPVIKQDDTAGILYSSGTTGVSKGVVLSHKNLIAMVELFVRFEASQYKCSCLRNVYLAGLPMFHVYGLSLFAVGLLSLGSTIVVMRKFDIDEVVRVIDEYKVTHFPVVPPMLTALITRANGVNDCKLQSLIQVSCGAAPLSSGVVDDFLRTFPAVDFIQGYGMTESAAVGTRGFNTEKFRNYSSIGLLAPNMEAKVVDWNTGSFLPPGSSGYLNNEEATMSTIDRDGWLHTGDVVYFDNDGYLYIADRLKDIIKYKGFQVSNFKF 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03407 452 Pfam AMP-binding enzyme 50 442 IPR000873 -
Vimu7g03407 452 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 18 448 - -
Vimu7g03407 452 ProSitePatterns Putative AMP-binding domain signature. 199 210 IPR020845 -
Vimu7g03407 452 Gene3D - 22 438 IPR042099 -
Vimu7g03407 452 SUPERFAMILY Acetyl-CoA synthetase-like 50 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03407 Vimu-Chr7 28693383 28696362 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03407 14 448 Monolignol Biosynthesis Gene Families AT4G19010 58.889 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03407 K01904 - gmx:100804808 790.415