Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03389 ATGAGCGTTCCTCCGCCGTCTACGGCGGCGATGTGGACGCCGTTCACGGCGGCCCAGTGGCACGAGCTGGAGCACCAGGCTCTCATCTTCAAGTACCTCAAGGCGGGGCTCTCCGTTCCGCCCGACCTCCTTCTCCCCATTCGCAAGAGCCTCCAATTCATGGCACACCCATCTCTTGGGGGGTACTATGGGAAGAAGATAGACCCTGAACCGGGTCGGTGCAGGAGAACCGATGGGAAGAAGTGGAGGTGTTCCAGGGATGCTCACCCTGACTCCAAGTACTGCGACCGCCATATGATACGACGTCGTTACCGTTCAAGAAAGCCTGTGGAATCTCAACCTCACTCTTCTTCTGCTTCTTCAAACCCTGTTGCTGCTTCTGCTTCTGCTGCTTCCTCTGCAACGGGTTCTGCTACTTCTTCTGCAACTGGTTCTGCTGCTGCATCTGCGACAACCCTCAACACCCTTCCTTTGCATACCAATGGTGCCCGGGAGGGTTTCACTTTCACCCTTGGGAACAGCGCCACCACTGCCACCCCCACACTCCCCCACCTTCACATGGACCCCCTCACTCTTTCAGGTGACAACACCAAGAAAACTTACCGGTATGTATGCCCATTCGCCTCTTTCAGATTGAGCCCTTTCCGCCGTGTAATCCATGTACTCGACCTCATCAGGAGAAACAAGACTGTTGCTGATGTTGTAGTAGTGTATTATTATGTTATAGTTCTGTACAGCAAACATGGTAGCGGTGATGTTAAGTTACCTAACATGTGGACCATTATGATGTGTGAGGTGAGATTCTGGGAGTTTGGACTGAACTCAGAAGCAGATGAGCATGTCTTACAGAAAGATCTGGGAAGTGTGAGATATCAAGGTTATGACTTCACCTCAGACAGCATGTGGTCTCATATGTCTCCAATTCCATCAAGTACTGTTTCAGAATCGAGAAGTGGTTCTACCATGCTGGGCAACTGCTTCCAACAGCAAACAATGCGAGATGCGGAGCTGTTGAACCTTGAAACTGCAAGGACCAAAGACCTTATATTTAGTAGCCAGTTAAGTTCAGCAGGGAGTTTGAAACAGGAATATCAGTCTCCTCAGTCTCTCTTCAGTGACTGGGACTGGAAGAAGGATTTAAGTTCGTCTGCCATCGAGTATAGACCCAACAAGGATTTTAACTGCAATCCAGATGCCAATGTTGATTAA 1209 0.5004 MSVPPPSTAAMWTPFTAAQWHELEHQALIFKYLKAGLSVPPDLLLPIRKSLQFMAHPSLGGYYGKKIDPEPGRCRRTDGKKWRCSRDAHPDSKYCDRHMIRRRYRSRKPVESQPHSSSASSNPVAASASAASSATGSATSSATGSAAASATTLNTLPLHTNGAREGFTFTLGNSATTATPTLPHLHMDPLTLSGDNTKKTYRYVCPFASFRLSPFRRVIHVLDLIRRNKTVADVVVVYYYVIVLYSKHGSGDVKLPNMWTIMMCEVRFWEFGLNSEADEHVLQKDLGSVRYQGYDFTSDSMWSHMSPIPSSTVSESRSGSTMLGNCFQQQTMRDAELLNLETARTKDLIFSSQLSSAGSLKQEYQSPQSLFSDWDWKKDLSSSAIEYRPNKDFNCNPDANVD 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03389 402 SMART QLQ_2 13 49 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vimu7g03389 402 MobiDBLite consensus disorder prediction 68 124 - -
Vimu7g03389 402 ProSiteProfiles QLQ domain profile. 14 49 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vimu7g03389 402 Pfam QLQ 14 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vimu7g03389 402 PANTHER GROWTH-REGULATING FACTOR 5 13 374 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vimu7g03389 402 ProSiteProfiles WRC domain profile. 68 112 IPR014977 -
Vimu7g03389 402 Pfam WRC 69 111 IPR014977 -
Vimu7g03389 402 MobiDBLite consensus disorder prediction 68 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03389 Vimu-Chr7 28555458 28558478 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03389 14 111 GRF Transcription Factor Family AT3G13960 59.633 5.14e-37 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vimu7g03389 WRC 3.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03389 - - gmx:100809947 303.523