Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03377 ATGATCAGCACAGGGTACGTGATGCTACTTTCTTCTGATACAGGTGCTGCATCTTTAGTGCACTTGTGCAATGCATTGCTGACCCATCATTCTGTTAAAACTTCCGGTAAATCCTCTTGGGTAAGGTACAACTTAATTAAGGAAGTTGGTGATGGGACTTTTGGGAGTGTGTGGCGAGCTATAAACAAACAGACTGGGGAAGTTGTTGCTATCAAGAAGATGAAGAAGAAGTATTACTCTTGGGAGGAGTGTGTAAACCTAAGAGAAGTCAAGTCTCTGCGAAAAATGAACCACCCAAATATTGTCAAGCTGAAGGAAGTTATTCGAGAAAGTGACATTTTGTACTTTGTTTTTGAATACATGGAATGCAACCTATACCAGCTTATGAAAGATAGGGAAAAACTGTTTTCTGAAGGTGAAGTTAGAAATTGGTGTTTTCAAGTTTTCCAAGGTCTTGCTTACATGCACCAGCGTGGGTACTTCCATCGTGACCTGAAGCCCGAAAACTTGCTGGTTACAAAGGATATCATCAAAATTGCTGATTTTGGCCTAGCTCGAGAGATCACTTCACAACCACCCTACACTGAATATGTCTCCACACGATGGTACCGTGCTCCTGAAGTGTTGCTTCAGTCTTATATGTATACCTCTAAAGTTGACATGTGGGCAATGGGTGCTATAATGGCTGAGCTTTTCTCTCTTCGTCCCCTTTTCCCGGGTGTCAGTGAGGCAGATGAGATATACAAAATATGTGGTGTGATAGGCAATCCAACCCATGAATCTTGGGATGATGGACTCAAGCTTGCAAGGGATATTAACTACCAATTTCCACAGCTTGCTGGTGTGCATCTTTCTGCACTGATCCCGTCTGCTAGCAATGATGCAATCAGCCTTATCACATCACTTTGCTCTTGGGATCCCTGCAAGAGGCCAACAGCTTCTGAGGCCCTTCAGCATCCTTTCTTTCAGAGTTGCTTCTATATTCCTCCATCCCTTCGCAGCAGAGCAGTAGCGAGAACTCCACCATCTGCTGGAACCAGAGGAGCCCTGGATCACCAAGGGGTCAAGAGATATTCTGGTGTTTTATCCAATTCAAAGACCACCAATAATTTTTCTTCCCAGAAATTACATCCTCCTTTAGCTTCAGATCGTTGTTCTTACCCAATTAAGAATGTTACAGGTGTGCAACGGAAGCTGGATATGGTAAATCAGGATGGAATTAAGAATGAAAAACCTATGAGGAGTACTAAACCAAAGTATCGACAGCCAGGAAAGGACAGCCCAACTTTTATGAACAAGGGGAGGTATGCGCGTGGGGTTTCAGAAGCAGCTGAGAAATTGGGCAATTTGTCTGTTAGTACAAGAAGACAATCAATGGGACATCCCCGTCCTCCACCAATGAAGGCTGGAGTGAATTGGATGTCGGAAACTGGAAACTTCATCCTTGGTGAGAATCCGGCTATCCCTTTGGTTTCTTATGTCCTATTAAAAGCCAAAAATAAGCTTGAATTCATTGATGACACTATTGAAGAACCGGTGAAGGAATATGCTACTTACCAGGCACGAAAACGTTGCAATAACATGAGGGTATATTGGCTTGTGTACTCGTTTTTGACTCCTATACAGCAAAGCATCTTATGGATTGATGGACAAGAGGAAGGTACCAAGAATTGCAATGGCTGCACCAAGAGCATTGACAGGCTGAATTGTTTCAAGGCTACAAGACCGCCTGTGGAAACAGAAAAAATTCTCTTGATGTATGATTTGAGGAGTGCCAAAGATTATACAGCCAAGGATTTCAAATTGGTTTGCAACTACGGAAACCATGTGCATACAGATTTGGTGGAGTTAGTCAAAAATTCCGTTTTTTTGGCCATTTGA 1881 0.4285 MISTGYVMLLSSDTGAASLVHLCNALLTHHSVKTSGKSSWVRYNLIKEVGDGTFGSVWRAINKQTGEVVAIKKMKKKYYSWEECVNLREVKSLRKMNHPNIVKLKEVIRESDILYFVFEYMECNLYQLMKDREKLFSEGEVRNWCFQVFQGLAYMHQRGYFHRDLKPENLLVTKDIIKIADFGLAREITSQPPYTEYVSTRWYRAPEVLLQSYMYTSKVDMWAMGAIMAELFSLRPLFPGVSEADEIYKICGVIGNPTHESWDDGLKLARDINYQFPQLAGVHLSALIPSASNDAISLITSLCSWDPCKRPTASEALQHPFFQSCFYIPPSLRSRAVARTPPSAGTRGALDHQGVKRYSGVLSNSKTTNNFSSQKLHPPLASDRCSYPIKNVTGVQRKLDMVNQDGIKNEKPMRSTKPKYRQPGKDSPTFMNKGRYARGVSEAAEKLGNLSVSTRRQSMGHPRPPPMKAGVNWMSETGNFILGENPAIPLVSYVLLKAKNKLEFIDDTIEEPVKEYATYQARKRCNNMRVYWLVYSFLTPIQQSILWIDGQEEGTKNCNGCTKSIDRLNCFKATRPPVETEKILLMYDLRSAKDYTAKDFKLVCNYGNHVHTDLVELVKNSVFLAI 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03377 626 MobiDBLite consensus disorder prediction 404 421 - -
Vimu7g03377 626 FunFam serine/threonine-protein kinase MAK isoform X1 123 332 - -
Vimu7g03377 626 ProSitePatterns Protein kinases ATP-binding region signature. 49 73 IPR017441 GO:0005524
Vimu7g03377 626 Gene3D Transferase(Phosphotransferase) domain 1 123 327 - -
Vimu7g03377 626 MobiDBLite consensus disorder prediction 448 468 - -
Vimu7g03377 626 ProSiteProfiles Protein kinase domain profile. 43 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g03377 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
Vimu7g03377 626 Gene3D Phosphorylase Kinase; domain 1 32 122 - -
Vimu7g03377 626 CDD STKc_MAK_like 43 322 - -
Vimu7g03377 626 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 42 373 - -
Vimu7g03377 626 FunFam cyclin-dependent kinase F-4-like 40 122 - -
Vimu7g03377 626 MobiDBLite consensus disorder prediction 404 432 - -
Vimu7g03377 626 SUPERFAMILY Protein kinase-like (PK-like) 42 326 IPR011009 -
Vimu7g03377 626 SMART serkin_6 43 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g03377 626 Pfam Protein kinase domain 43 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03377 Vimu-Chr7 28483053 28493355 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03377 42 329 Core Cell Cycle Gene Families AT3G48750 37.500 2.49e-64 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_RCK Vimu7g03377 Pkinase 1.5e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03377 K08829 - gmx:100810150 819.69