Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03368 ATGGCCGAAGCTTTGTTGGGCTCTGTGATTGAAAATTTGGGATCTTTTGTTCAAGACCAACTTGGAACTTACTTGGGTGTTGAACAACAAATTCAGAAGCTTTCCAACAACCTCACCGCAATTCGTGCTGTCCTCAGAGATGCGGAGAGAAAGCAAATTACAAGTGAAGTCCTCAAGAATTGGCTGCAGAAACTTACAGATGCAGCATATGTGTTGGATGATATCTTGGATGAATGTTCAATTCACTTCACAAAGATGCCCTCTGATGATGGACATACTTCCAGCCTATCCCGTCTCCATCCTAAGGACATTCTCTTTCGTTTCAATATTGGCAAGAGGATGAAAGACATCAGCCAAAGATTTCATGACATTCATGAAGAAAAGAGCAGGTTTAATTTAGAACATGGTGTCACAGAGGTGCAAGCAGTGGATGATGATTGGCGCCAAACTAGCTCTGACATTACAGAACCTGTAGTTTATGGCAGAGACCAGGATCGAGAGCAAATTGTGAAGTTTCTTCTGGAAGATGCCAGTAACAGTGAAGAGCTCTCTATCTTTCCCATAGTTGGTATGGGTGGACTTGGAAAAACAACATTAGTAAAGCAGGTTTTCAATGATCACAGGGTATGCAAACATTTTGACTTGACAATTTGGGTTTGTGTTTCTGATGATTTCAAAACCATGACAATACTACAATCCATCATAGAATGCATCACCGGACAAAATCCCAATCTCAATAGCTTAGAAGCAATGCGGAAAAAGGTTGAAGAAGTGTTGCATGGGAAGATGTATTTACTTGTTCTTGATGATGTGTGGAATGAAGACCCAGAGAAATGGAAGCAGTTGAAGGGAAAGTTGCAGTGCGCAAGGGCAGCAAAAGGAGCTACCATTTTGGTCACCACTCGACTCGAGGAAGTTGCTTCCATCATGCAGACGCATCCTGCTTACCATTTGAAAGAATTGCCAGGAGACGAAAGTTGGTCGTTGTTCAAATACCATGCGTTTGGACCAAATCGAGAAGAAATGGAAGAGCTCGTGGCAATTGGCAAAGAGATCGTGAGAAACTGCATTGGTTTGCCGCTTGCCATAAAAACACTGGGAAGCCTCTTGCGTGATCAAAGTGAGGTAAGACAATGGATAAATGTAAAGGAAAGTAGTTCTGCGACAGGTGAGGAAAATTTTATTATGCGTGCTTTGAAACTTAGCTATTCTAATTTGGAGTTGTCTTTGAGGAGATGTTTTTCATTTTGTGCAATTTTCCCCAAAGATTTTGAAATAGATAAGGAAGTATTAATTCATCTCTGGATGGCTAATGGGTTTATTGAAAATGAAAGAAATATAGAAGTGGAGGATGTTGGAAATAAAGTGTGGAATAAATTATACCGTAGATCATTTTTTCAGGAAGCGAAGTGTGATGAGTTTGGTATCTTGAAAAGTTTCAAGATGCATGATCTATTTCATGATCTTGCCCAGTCTATTATGGGTGAAGAATGTGCGGCTTTTGTGGAAGAAAGGTTGACTCCGTTGTCAAGTAGAGTTCACTATTTATCTTCTAATGTTTCTTATCGAGGATTGAAGCATGCTTTCAAGAAAGTTGAATCCCTGCGGACTTTTCTTGATTTGAGGCCTTATTTTCGTGTTAGTGATTCTGACCCGGTGCCATCAAACCATTCTCTCCGAGCATTATGCACAAAATCTTCTTTGTTGTCCCCACTCAAGGATTTAACACATCTGAGATATTTGAGTTTGAATTGTGATTATAGAGCAAACTTAAATATTAACTTAATTTGTCAAATGCGAAAATTGCAAATTTTGAAATTGCAATGTTCAGTATATCTTCGTGGACTGCCCAAAAACTTGACGCAATTACAAGATCTAAGACATATTGTGATGGATGGTTGTGATTCAGTAGAAGAGACGCTTCCCAAAATTAGCAAGTTAAGGCATCTAAGAACACTAAGCATTTTCGTGGTGGGTTCAAAGCCAGGGTGTGGCTTAACAGAGTTGCATAGCTTAAATCTGGGAGGCACCCTAAGAATCAGAGGCCTTGAGAACGTTCCGAATGAATGGGATGCTAAAGAAGCAAATTTGATTGGTAAGAAGGAGTTGAATATCCTGCGTTTGTCATGGGATGGTAATGGTAATCCAAAAGGTAGTAATGTAAGTGTGGAGAGAGTACTGGAAGCCCTAGAACCTCCCTCAACTCTCAAGAGTTTTGAGATGAATGGATATCAGGGAAGGCAGTTTTCGAGTTGGATGAGAAATAGTGGAGTTTTGAGTGACTTGGTGGAAGTTAAGCTCTTGGGCTGTGAGAACTGTGAGGAGCTTCCCCCACTTGGTAAACTTCCACACTTGAAAAGGCTAGAGGTGAGTGGAATGAAAAATGTGAAGTGGATAGATGGTGAGACGTATGAGGGCGTGGAGGAGAAGGCATTTCCATCGTTGGAGGAACTGAGAGTGGAGAATTTACCAAATATGGAGAGGTTTTTGAGGGATGAAGGAGTAGAGATGGTCCCTCATCTTTCCAAATTAAGAATTGAGGGTGTGTTGAACTTTAAAGTCCCACGTCTTCCTTGTGTTGAGGAACTAGATGCCAGAAAAATTGAGGCAGGGACTTCTTTCATGGAAGGGGTTGGGGAGAATATGGCTTGTCTAAAGACCTTAAGCATTAAATTCATTAAAGGAGTGGTGGTATTACCGGACGAATTCAGGAGGTTGGGTGCACTACAGGAACTATACATTGGTGAATGGTATGATCTGGAGTATTTTCCAGAACACGTGATGGAAGGTCTAACTTCTCTTCGAACTTTGTCCATTGAATTCTGTGAGAAATTGAAATCATTGTCTGAAGGTGTGGGACATTTGGCTTGTCTTGAGAGATTGACGATCAGTAAATGTCCAGAGCTGGTGGCACTACCAAGCAATATGAGTCAACTATCTGCCCTTCGGGAGGTTTTAATCAAGTATTGCTGCACATTACCAGATGGCTTACAACGTGTCCCTTTCCTACGAACTTTGGATATATCATGTTGCAAATGTAGTTCATTACCAGACTGGCTGGGAGACATGACTTCTCTTCAAAAATTAGGCATTTGGTTTTGTAAGGAGTTGAGGTCACTGCCGAGTAGCATTCAACGCCTCACCAACTTGTCTCATTTATGGATAGCCCAATGTCCTCATCTGAAGAAGCGGTTCAAGAGAGAAACAGGAGAGGATTGGCAATACATAAACCACATTCCTAAATTAGAGTTGTTGTCATTATGGTAA 3267 0.4102 MAEALLGSVIENLGSFVQDQLGTYLGVEQQIQKLSNNLTAIRAVLRDAERKQITSEVLKNWLQKLTDAAYVLDDILDECSIHFTKMPSDDGHTSSLSRLHPKDILFRFNIGKRMKDISQRFHDIHEEKSRFNLEHGVTEVQAVDDDWRQTSSDITEPVVYGRDQDREQIVKFLLEDASNSEELSIFPIVGMGGLGKTTLVKQVFNDHRVCKHFDLTIWVCVSDDFKTMTILQSIIECITGQNPNLNSLEAMRKKVEEVLHGKMYLLVLDDVWNEDPEKWKQLKGKLQCARAAKGATILVTTRLEEVASIMQTHPAYHLKELPGDESWSLFKYHAFGPNREEMEELVAIGKEIVRNCIGLPLAIKTLGSLLRDQSEVRQWINVKESSSATGEENFIMRALKLSYSNLELSLRRCFSFCAIFPKDFEIDKEVLIHLWMANGFIENERNIEVEDVGNKVWNKLYRRSFFQEAKCDEFGILKSFKMHDLFHDLAQSIMGEECAAFVEERLTPLSSRVHYLSSNVSYRGLKHAFKKVESLRTFLDLRPYFRVSDSDPVPSNHSLRALCTKSSLLSPLKDLTHLRYLSLNCDYRANLNINLICQMRKLQILKLQCSVYLRGLPKNLTQLQDLRHIVMDGCDSVEETLPKISKLRHLRTLSIFVVGSKPGCGLTELHSLNLGGTLRIRGLENVPNEWDAKEANLIGKKELNILRLSWDGNGNPKGSNVSVERVLEALEPPSTLKSFEMNGYQGRQFSSWMRNSGVLSDLVEVKLLGCENCEELPPLGKLPHLKRLEVSGMKNVKWIDGETYEGVEEKAFPSLEELRVENLPNMERFLRDEGVEMVPHLSKLRIEGVLNFKVPRLPCVEELDARKIEAGTSFMEGVGENMACLKTLSIKFIKGVVVLPDEFRRLGALQELYIGEWYDLEYFPEHVMEGLTSLRTLSIEFCEKLKSLSEGVGHLACLERLTISKCPELVALPSNMSQLSALREVLIKYCCTLPDGLQRVPFLRTLDISCCKCSSLPDWLGDMTSLQKLGIWFCKELRSLPSSIQRLTNLSHLWIAQCPHLKKRFKRETGEDWQYINHIPKLELLSLW 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03368 1088 Gene3D - 6 120 - -
Vimu7g03368 1088 Pfam Rx N-terminal domain 6 88 IPR041118 -
Vimu7g03368 1088 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 143 417 IPR027417 -
Vimu7g03368 1088 Gene3D - 148 315 IPR027417 -
Vimu7g03368 1088 FunFam Probable disease resistance protein At1g61300 141 315 - -
Vimu7g03368 1088 CDD RX-CC_like 2 124 IPR038005 -
Vimu7g03368 1088 FunFam Probable disease resistance protein At1g63360 403 492 - -
Vimu7g03368 1088 SUPERFAMILY L domain-like 481 848 - -
Vimu7g03368 1088 PANTHER DISEASE RESISTANCE PROTEIN RP 32 826 IPR044974 GO:0006952
Vimu7g03368 1088 Coils Coil 31 51 - -
Vimu7g03368 1088 Gene3D Ribonuclease Inhibitor 506 853 IPR032675 -
Vimu7g03368 1088 Pfam NB-ARC domain 163 405 IPR002182 GO:0043531
Vimu7g03368 1088 SUPERFAMILY RNI-like 846 1085 - -
Vimu7g03368 1088 Gene3D - 409 492 IPR036388 -
Vimu7g03368 1088 Gene3D - 321 407 IPR042197 -
Vimu7g03368 1088 Gene3D Ribonuclease Inhibitor 854 990 IPR032675 -
Vimu7g03368 1088 Gene3D Ribonuclease Inhibitor 991 1088 IPR032675 -
Vimu7g03368 1088 PRINTS Disease resistance protein signature 356 370 - -
Vimu7g03368 1088 PRINTS Disease resistance protein signature 185 200 - -
Vimu7g03368 1088 PRINTS Disease resistance protein signature 258 272 - -
Vimu7g03368 1088 PRINTS Disease resistance protein signature 929 945 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03368 Vimu-Chr7 28440395 28443661 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03368 188 801 WRKY Transcription Factor Family AT5G45050 22.734 4.56e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03368 - - vum:124833357 1668.67