Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03360 ATGGCTGACCCTTTGCTGGGAATTGTGTTTCAAGACTTGCAATCTGTTGTTCAAAGCCAACTTGCAACCTATTGGGGTATTGATCAACAGGCACAGAAGCTTTCCAGCAATCTTACGGCAATTCGTGCTGTCCTCACAGATGCTGAGAGAAAGCAAATAGCAAGCCTTGCTGTGAAGGATTGGCTACAGAAACTCACAGATGCAGCATATGTGCTTGACGATATATTGGATGAATGTTCAATTCACTCCAGAGAGATGCTGTCTGATGATGGGCATACTTCATGCTTAGCCCGAGCACATCCTAAGGACATTCTCTTCCGTTTTCATATTGGAAAGAGGATGAAAAATATCACCCAAAGATTTCACGACATCAATGAAGAAAGACGCATGTTTGAATTACGTGATGGTGTCACAGAGAAGCCAACAGTAGATGATGGTGAGGATGATCAAACTACCTCTGTCATAACCGAACCCATATTCTGTGGCAGAGACGAGGATCGAGAGAAAGTCGTGAAGGTTCTCCTAGAAGCTAATAACAATGAAGACCTCACCATCTATCCCATAGTTGGTATGGGTGGACTTGGCAAAACAGCTCTTGCCAAGCATGTCTTCCATGACCAAAGGGTATGCAAACATTTTGACTTGACAATTTGGGTGTATGTTTCTGTTGATTTCAATGTGAAGGCAATACTGCAATCCATCATAGAGTATGCCACCGGACAAAACCCCAATCTCCATACTTTAGAAACAATGCGGAAAAAGGTTGAAGAAGTGTTGCAGAGCAAGAGATATTTACTTGTTCTTGATGATGTGTGGAATGAAGACCAAGAGAAATGGAAGCATTTGGAGGGGATATTGCGGTTTGCAAGGGGAGCAAAAGGAGCTACCGTTTTGGTCACAACTCGACTCGAGGAAGTTGCTTCCAACATGGAAACGCATCCAGCTTACCATTTGACAGAATTGTCAGAATATGACAGTTGGTCATTGTTCAAAAGCTATGCGTTTGGACCAAACAGAGAAGAGAAGAAAGAGCTTGTGGCAATCGGTGAAGACATTGTAAAAAAATGCGTTGGTTCACCGCTTGCAATCAAAACACTGGGAAGCCTATTGCGTGATCAAACTGCGGTAACACAATGGGAAAATATAAAGGAAAGTGAGATTTGGGATATACGGAGTGAAAGTAGTTCTATGACGGGTAAGGAAAATTCTATCATGCGTGCTTTGAAACTAAGCTATTTTAATTTGGAGTTGTCATTGCGAAGATGCTTTTCTTTCTGCGCAATATTCCCCAAAGGTTTTGAAATTGTCAAGGAAGAACTAATTCATCTCTGGATGGCTAATGGATTTGTTAAATCTGAAGGAAATGTAGAAGTGGAGGATGTCGCCAATAATGTGTGGAGAAAATTATACCGTAGGTCATTCTTTCAAGAAGCAAAGTCTGACAAGTTTGGTATGATTACAAGTTGTAAGATACATGATCTATTTTACGATCTTGCCAAGTCTATTATGGGTGAAGAATGTGTGATGGTTGAGGAAGGAAGGTTGAGTCAGTTGTCAACTAGAGTTCACCATTTACACTTCTTAACTTATAATATGTCTGTCGATGTAGCTGCTTTCAAGAAAGTTGAATCTCTGCGGACTTTTCTTTTCGGTAATATTAGGCAGTTGCCATCAAACCGTTTTCTGCGAGCATTATGTATAAGATCTTCTATGTTGCCTCCATTGAATGATTTAGCACATTTGAGATACTTGAGTGTGCATGATAGCTCGGTGAGAAATTTGAATGATTCAATTTGTCAACTGTCGAAATTGCAAATATTGAAACTGGAGTCTTGCTTTGATTTTTACGAGATAACTAAAAAGTTAACACAATTACAGGATCTAAGACATATTTTGATTAATAAGTGTGGTTCAGTACCAGATATGCCTCCGAATATTGGCAAGTTAAGGCATCTAAGAACATTAAGCCTTTTCGACGCGGGTTCAACACCTGGGTATGGGTTGACAGAGTTAAGTGGCTTAAGGCTGGGAGGCAGGCTGCATATCAGAGGACTTGGGAATGTGAGCAACGAATGGGATGCTAAAGAAGCAAATTTGAAGAGCAAGAAGGAGTTGAATCGCCTATACTTGTCATGGGGTGGTGGTGCTAATTCAGAAGGGAATAATGTTAGTGCAGAGAGAGTACTGGAAGCCTTGGAAGCTCCCTCGACTCTGAAGGGTTTTGGGATGGAAGGATATCAGGGAAGAAAGTTACCGAGTTGGATGGGAAGTGTTGTAGTTCTGAAAGACTTGGTGGAAATTATACTCTTTGACTGTAACAACTGTGAGGAGCTTCCTCCACTTGGTAAACTACCACACCTGAAAAGGGTACACGTGCGTGGAATGAAAAATGTGAAGTGGATAGATGGTGAGTCGTATGAAGGTGTGGAGGAGAAGGCATTTCCATCGTTGGAGAAATTGAGTGTAGAGAATTTACCAAAGTTGGAAAGGATGTTGAGGGATGAAGGAGTAGAGATGGTCCCCCATCTTTCCCAATTAAAAATTGATGGTGTCTTCAACTTTAAAGTCCCACATCTTCCTTGTGTTGAGGAGCTTCATGCTACAAGAATTGTAGCAGCGACTTCCTTCATTGAAGGGGTTGGGGATAACATGGTTTCTCTAAAGACTCTGAGTGTTAGATTGATTAAAGGACTGAAGGTACTACCGGACCAACTGAGGAGGCTGGGTGCCCTGAAGGACCTTCGCATTGGATTTTGGTATGATTTGGAGCATTTTCCAGAACATGTATCGGAAGGTTTGACCTCTCTTCGAAGTTTGAGTATCAGCAATTGTCCAAAGCTGGTAGCTCTACCAAGCAATATGAGCAAACTAACTTCCCTTCGGACTGTCTCAATCTATGATTGCTCTACATTACCATATGGCTTACAATTTGTCCCCTCCCTACGAACTTTGTATATAGTAAGTTGCATGTTTACTTCATTGCCAGACTGGCTGGGAGATATGACTACTGTTGAAGAATTATGGATTTGGAGCTGTAAGGAGTTGAGGTCACTGCCGAGTAGTATTGAACGCCTCACCAACTTGTCTTATTTAACTATATACTACTGTCCTCATCTGAGGAAGCGATGCATGAGGGAAACAGGAGAAGATTGGCAATACATAAAGCACATTCCAGAAATAAAACTGGACTCCTACTCACTCCCAGAGGAAAAGACTTTAACATTAAGTGGTGTATCCGCCGATTATCTTGCTCATGGAACTGCTTCAAGACTGCTAGACAGCCTGCCAAAGGAGTGGATTTGGGGTTTGGACTATAAATCGGATCGAAATCATTACTACCGCGTTCTAGCTCTTCAGAATGAATATCGACCTATGGCGGGTTGTGCACTTGTGGTGGTCTATACTGCTTTGGAAAGCCATTGTCATGGGTTAAACCCTACCACACACACAAGGTTAGCCATACTGGAAGCACCCAAGACTAGGACATCCTACTACTCTCACCACATGACTAATTCTTCTCTAAGTGAGATTGAAAGAGTCATTAGAGTGTTAGGATAA 3558 0.4182 MADPLLGIVFQDLQSVVQSQLATYWGIDQQAQKLSSNLTAIRAVLTDAERKQIASLAVKDWLQKLTDAAYVLDDILDECSIHSREMLSDDGHTSCLARAHPKDILFRFHIGKRMKNITQRFHDINEERRMFELRDGVTEKPTVDDGEDDQTTSVITEPIFCGRDEDREKVVKVLLEANNNEDLTIYPIVGMGGLGKTALAKHVFHDQRVCKHFDLTIWVYVSVDFNVKAILQSIIEYATGQNPNLHTLETMRKKVEEVLQSKRYLLVLDDVWNEDQEKWKHLEGILRFARGAKGATVLVTTRLEEVASNMETHPAYHLTELSEYDSWSLFKSYAFGPNREEKKELVAIGEDIVKKCVGSPLAIKTLGSLLRDQTAVTQWENIKESEIWDIRSESSSMTGKENSIMRALKLSYFNLELSLRRCFSFCAIFPKGFEIVKEELIHLWMANGFVKSEGNVEVEDVANNVWRKLYRRSFFQEAKSDKFGMITSCKIHDLFYDLAKSIMGEECVMVEEGRLSQLSTRVHHLHFLTYNMSVDVAAFKKVESLRTFLFGNIRQLPSNRFLRALCIRSSMLPPLNDLAHLRYLSVHDSSVRNLNDSICQLSKLQILKLESCFDFYEITKKLTQLQDLRHILINKCGSVPDMPPNIGKLRHLRTLSLFDAGSTPGYGLTELSGLRLGGRLHIRGLGNVSNEWDAKEANLKSKKELNRLYLSWGGGANSEGNNVSAERVLEALEAPSTLKGFGMEGYQGRKLPSWMGSVVVLKDLVEIILFDCNNCEELPPLGKLPHLKRVHVRGMKNVKWIDGESYEGVEEKAFPSLEKLSVENLPKLERMLRDEGVEMVPHLSQLKIDGVFNFKVPHLPCVEELHATRIVAATSFIEGVGDNMVSLKTLSVRLIKGLKVLPDQLRRLGALKDLRIGFWYDLEHFPEHVSEGLTSLRSLSISNCPKLVALPSNMSKLTSLRTVSIYDCSTLPYGLQFVPSLRTLYIVSCMFTSLPDWLGDMTTVEELWIWSCKELRSLPSSIERLTNLSYLTIYYCPHLRKRCMRETGEDWQYIKHIPEIKLDSYSLPEEKTLTLSGVSADYLAHGTASRLLDSLPKEWIWGLDYKSDRNHYYRVLALQNEYRPMAGCALVVVYTALESHCHGLNPTTHTRLAILEAPKTRTSYYSHHMTNSSLSEIERVIRVLG 1185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03360 1185 Gene3D - 418 501 IPR036388 -
Vimu7g03360 1185 PRINTS Disease resistance protein signature 258 272 - -
Vimu7g03360 1185 PRINTS Disease resistance protein signature 356 370 - -
Vimu7g03360 1185 PRINTS Disease resistance protein signature 931 947 - -
Vimu7g03360 1185 PRINTS Disease resistance protein signature 185 200 - -
Vimu7g03360 1185 FunFam Probable disease resistance protein At1g61300 145 315 - -
Vimu7g03360 1185 Gene3D Ribonuclease Inhibitor 874 1051 IPR032675 -
Vimu7g03360 1185 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 426 IPR027417 -
Vimu7g03360 1185 Gene3D - 6 123 - -
Vimu7g03360 1185 Gene3D Ribonuclease Inhibitor 517 869 IPR032675 -
Vimu7g03360 1185 SUPERFAMILY L domain-like 490 850 - -
Vimu7g03360 1185 SUPERFAMILY RNI-like 883 1056 - -
Vimu7g03360 1185 FunFam Probable disease resistance protein At1g63360 412 501 - -
Vimu7g03360 1185 Gene3D - 320 416 IPR042197 -
Vimu7g03360 1185 Coils Coil 31 51 - -
Vimu7g03360 1185 Pfam NB-ARC domain 165 412 IPR002182 GO:0043531
Vimu7g03360 1185 PANTHER DISEASE RESISTANCE PROTEIN RP 40 828 IPR044974 GO:0006952
Vimu7g03360 1185 Pfam Rx N-terminal domain 6 85 IPR041118 -
Vimu7g03360 1185 Gene3D - 147 315 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03360 Vimu-Chr7 28410571 28418979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03360 182 745 WRKY Transcription Factor Family AT5G45050 23.114 4.43e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03360 - - vum:124833357 1440.63