Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03353 ATGGCTGAGGCTTTGCTCGGAACTGTAAATCAAAACTTGCAATCTTTTGGCCAAGACCAACTTGCAACGTTTTGGGGTGTTCACCAACAGACTCAAAAGCTTTCCAGCAATCTCACTGCAATCCGTGCTGTTCTCAGAGATGCTGAGAGAAAACAAATAACAAGTTATGCTGTCAAAGATTGGCTGCAGAAACTCACAGATGCAGCATATGTGCTTGATGATATCTTAGATGAATGTTCAATTCACTCCACAAAACTGAATTTTGATGATGCACATACATCATGCCTAACCCGTCTCCATCCTAAGGACATTCTCTTTCGTTTCAATATTGGCAAGAGGATGAAAGACATCACACAAAGATTTCAAGACATTCATGAAGAAAGGAGCATGTTTAATTTAGTACCCGGTGTCACAGAGGTCCAAACAATCGATGATAATTGGCGCCAAACTAGCTCTGACATTACAGAACCTGTAGTCTACGGTAGAGACCAGGATCGAGATCAAATTTTGAAGTTTCTTTTGGAAGAGGTTAGTGACAGTGAAGACCTCTCCATCTATCCCATAGTTGGCATGGGTGGACTTGGAAAAACAACATTAGCCAAGCAGGTCTTCAATGATAACAGGGTATGCAAACATTTTGACTTGACAATTTGGGTTTGTGTTTCTGATGATTTCAACACCATGACAATACTCCGATCCATCATAGAATGCATCACTGGACAAAAATCCAAACTCAAAAGCTTAGAAGCAATCTGGAAAAAGGTTGAGGAAGTGTTGCACGGGATGAAGTATTTACTTGTTCTTGATGATGTGTGGAATGAAGACCAAGAGAAATGGAAGCAGTTGAAGGGAAAACTGCAATGCGCAAGGGCAGCAAAAGGAGCTACCATTTTGGTCACTACTCGACTCGAGGAAGTTGCTTCCACCATGCAGACACATCCTGCTTACCATTTGAAAGAATTGTTAGGAGATGATAGTTGGTCATTGTTCAAACACCATGCGTTTGGACCAAACAGAGAAGAAACGGAAGAACTCGTGTCAATTGGCAAAGAGATAGTGACAAAATGCATTGGTTCGCCGCTTGCAATCAAAACTTTGGGAAGCCTATTACGTGATGAAAGTGACGTAAAACTATGGCAGAATGTAAAGGAAAGTGAGATTTGGCATATACGGGAGGAAAGTAGTTTTGCCACAGGTGAGGAAAATTCTATCATGCGTGCTTTGAAATTAAGCTATTTTAATTTGGAATTGTCATTGCGGAGATGCTTTTCTTTTTGTGCAATTTTCCCCAAAGATTTGGAAATAGACAAGGAAGAATTGATTCATCTCTGGATGGCTAATGGGTTTATTGAAAGTGAAAGAAACATAGATGTGGAGGATGTTGGAAATAAAGTGTGGAATAAATTATACCGTAGATCATTTTTTCAGGAAGCAAAGTGTGATGAATTTGGTATGATCAAAAGTTTCAAGATGCATGATCTATTTCATGATCTTGCCCAGTCTATTATGGGTGAGGAATGTGTGGTTGTTGTGAAAGGAAGATTGACTACATTGTCAACTAAAGTTCACTATTCAAGCTTGTTCAATTCTGGTGAGTCTGATGATATGACTGCTCAAAGAGTTCACTATTCAAGCTTGTTCAATTCTGGTGAGTCTGATGATATGACTGCTCAAAGATTCATGACTGCTTTGAAGAAGGTTGAATCCCTGCGGACTTTTCTTGATTATGAGGGTATTGGTCCGATGCCATCAAATCCTTGTCTCCGAGCATTGCAGACAAGCTCTTCTTTGTTATCCCCACTCAAGGATTTAACACTTTTGAGATACTTGAGTTTGAGTTTGACTTTTAATAGGAGTTCGGAAGAAAACTTAAATAACTCAATTTGTCAGTTGCCGAAACTACAAACATTGAAACTGTGTAATTGCCACCAATTTCATGGGCTGCCTAAGAACTTGACACGATTAGAGGATCTGAGGCATATTGTGATTAATGGCAGGGATTCAATACAAGAGATGCCTTCGAATATTGGCAAGTTAAGGCAACTAAGAACCCTGAACATTTTTGTTGTGGGTTTAAAACCAGGGTGTGGATTAGCAGAGTTGCATAGCTTAAAGCTGGGAGGCACGCTGAGAATCAGAGGCCTTGAAAACATCCCCAATGAATGGGATGCTAAAGAAGCAAATTTAATGACCAAGAAAGAGTTGAATCGCCTACACTTGTCATGGGGTGGTAGTGCTAATTCAGAAGGTAGTAATGTTAGTGCGGAGAAAGTACTTGAAGCCCTGCAACCACCCTCAACTCTGAAGAGTTTTGAGATGAGAGGATATCGAGGAAGACAATTATCCCATTGGATGAGAAGTGTTGTAGTTCTGAGAGACTTGGTGGAAGTTAACCTCTTGGACTGTGACAACTGTGATGAGCTTCCTCCACTTGGCAAATTACCACTCTTGAAAAGGCTAGAGGTGAGTGGAATGAAAAATGTGAAGTGGATAGATGGTGAGACATATGACGGCGTGGAGGAGAAGGCATTTCCATCGTTGGAGAAACTGACCATGAGAAATTTACCAAATTTGGAGAGAATGTTGAGGGAGGAAGGAGTAGAGATGCTCCCTCGACTTTCTGAATTAAGAATTTTTTGCGTCTCCAACCTTAAATTTCCTCGTCTTTCTTCTGTTGAGAAACTTGTTGCTGTGAGCATTGACGAAGTGGCTTCCTTCATGGAAGGGGTTGTGGGGAATCTTCCTTCTCTAAAGACCTTGGAAATTCAAAGCGTTAAAGGAGCTGTGGTATTACCCAACCAACTCCGTGGGTTGGATGCGCTACAAGAACTATGTATTGGAGATTGGCAAGATGTGGAGTATTTTACTGAACACGTGCTTGAAGGTCTAACTTCTCTACGAACTTTGTCCATTAATTACTGTAAGAAATTAAAATCCTTGTCTGAAGGTGTGCAGCATTTGGCTTGTCTTGAGAGTTTGACGATCAGTGGTTGTCCAGAGCTGATGAATCTATCAAGCAATATGAGCCAACTAACTACCCTTTGGACTGTGTCAATTAAGGTATGCTCGAGATTACCGTATGGCTTACAACATGTCCCTTCCCTAAGAACTTTGGATATAACATCTTGCAAATGTACTTCATTGCCGGACTGGGTCGGAGACATGACTTCTCTTCAAAAATTAAGCATTAGGTTCTGTAGGGAGTTGAGGTCATTGCCGAATAGCATTCAACACCTCACCAACTTGTCTCATTTAAGCATACACGGATGTCCTCGTCTGAAGAAGCGGTGCAGGAGGGAAACAGGAGAGGATTGGCAATACATAAAGCACATCCCAAAAATAGAACTATTCCATTGTGAAACCGACCTTTTATGGTAA 3378 0.4094 MAEALLGTVNQNLQSFGQDQLATFWGVHQQTQKLSSNLTAIRAVLRDAERKQITSYAVKDWLQKLTDAAYVLDDILDECSIHSTKLNFDDAHTSCLTRLHPKDILFRFNIGKRMKDITQRFQDIHEERSMFNLVPGVTEVQTIDDNWRQTSSDITEPVVYGRDQDRDQILKFLLEEVSDSEDLSIYPIVGMGGLGKTTLAKQVFNDNRVCKHFDLTIWVCVSDDFNTMTILRSIIECITGQKSKLKSLEAIWKKVEEVLHGMKYLLVLDDVWNEDQEKWKQLKGKLQCARAAKGATILVTTRLEEVASTMQTHPAYHLKELLGDDSWSLFKHHAFGPNREETEELVSIGKEIVTKCIGSPLAIKTLGSLLRDESDVKLWQNVKESEIWHIREESSFATGEENSIMRALKLSYFNLELSLRRCFSFCAIFPKDLEIDKEELIHLWMANGFIESERNIDVEDVGNKVWNKLYRRSFFQEAKCDEFGMIKSFKMHDLFHDLAQSIMGEECVVVVKGRLTTLSTKVHYSSLFNSGESDDMTAQRVHYSSLFNSGESDDMTAQRFMTALKKVESLRTFLDYEGIGPMPSNPCLRALQTSSSLLSPLKDLTLLRYLSLSLTFNRSSEENLNNSICQLPKLQTLKLCNCHQFHGLPKNLTRLEDLRHIVINGRDSIQEMPSNIGKLRQLRTLNIFVVGLKPGCGLAELHSLKLGGTLRIRGLENIPNEWDAKEANLMTKKELNRLHLSWGGSANSEGSNVSAEKVLEALQPPSTLKSFEMRGYRGRQLSHWMRSVVVLRDLVEVNLLDCDNCDELPPLGKLPLLKRLEVSGMKNVKWIDGETYDGVEEKAFPSLEKLTMRNLPNLERMLREEGVEMLPRLSELRIFCVSNLKFPRLSSVEKLVAVSIDEVASFMEGVVGNLPSLKTLEIQSVKGAVVLPNQLRGLDALQELCIGDWQDVEYFTEHVLEGLTSLRTLSINYCKKLKSLSEGVQHLACLESLTISGCPELMNLSSNMSQLTTLWTVSIKVCSRLPYGLQHVPSLRTLDITSCKCTSLPDWVGDMTSLQKLSIRFCRELRSLPNSIQHLTNLSHLSIHGCPRLKKRCRRETGEDWQYIKHIPKIELFHCETDLLW 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03353 1125 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 426 IPR027417 -
Vimu7g03353 1125 Gene3D - 321 416 IPR042197 -
Vimu7g03353 1125 Gene3D - 146 315 IPR027417 -
Vimu7g03353 1125 Gene3D Ribonuclease Inhibitor 696 898 IPR032675 -
Vimu7g03353 1125 Pfam Rx N-terminal domain 6 87 IPR041118 -
Vimu7g03353 1125 Gene3D Ribonuclease Inhibitor 551 693 IPR032675 -
Vimu7g03353 1125 CDD RX-CC_like 2 124 IPR038005 -
Vimu7g03353 1125 Gene3D - 6 120 - -
Vimu7g03353 1125 PRINTS Disease resistance protein signature 961 977 - -
Vimu7g03353 1125 PRINTS Disease resistance protein signature 258 272 - -
Vimu7g03353 1125 PRINTS Disease resistance protein signature 356 370 - -
Vimu7g03353 1125 PRINTS Disease resistance protein signature 185 200 - -
Vimu7g03353 1125 SUPERFAMILY RNI-like 845 1102 - -
Vimu7g03353 1125 Gene3D Ribonuclease Inhibitor 899 1121 IPR032675 -
Vimu7g03353 1125 SUPERFAMILY L domain-like 476 923 - -
Vimu7g03353 1125 PANTHER DISEASE RESISTANCE PROTEIN RP 36 852 IPR044974 GO:0006952
Vimu7g03353 1125 Pfam NB-ARC domain 163 412 IPR002182 GO:0043531
Vimu7g03353 1125 FunFam Probable disease resistance protein At1g63360 412 501 - -
Vimu7g03353 1125 FunFam Probable disease resistance protein At1g61300 141 315 - -
Vimu7g03353 1125 Gene3D - 418 501 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03353 Vimu-Chr7 28389823 28393200 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03353 993 1095 WRKY Transcription Factor Family AT4G12020 29.126 5.10e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03353 - - vra:106776709 2168.27