Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03347 ATGGCTGGGTCACTGACGCCAGGGGCGATAAAAGAAATATGCGGTGCCAATTGTTCCAGTAGTTTGAAACCAGTGTTGCAAGTTATAGATTTGAAGCTGGTGCAGTCGCAACAAGCCAACAACACCGAGAGGTACCGGTTGATTCTTTCTGACGGTTCCTTTTACCAGCAAGGCATGCTCGCCACGCAGATGAACGAACTAGTTCATTCTGGAAAGTTGCAGAAAGGTTCCGTGGTTAGGCTCACACAGTTCATCTGCAACGATGTCCAGAACCGCAAGATTATTGTCATAATTGACCTAGATGTCGTAGTGGAAAAATGTGAGTTGATTGGAGAACCTGTCTCCTTACCAAAAGATGGATCTGTAGAATCTGGTACTGGTCAATCAGGAGTCACCCCTGGGAATTCACAATCTTTGAATAACCGTTCACACTCAGGAGGCATGGCTTCTAGACCGAATGTAGGTGGCATGGCTGCTAGACCGAATATGGCCATACCATCTCCAGATCATCCAAGAATGAACGCTCCTGCCAGTAGTGCTTATTCTGGCATTTCCAACACTGGATCTAGTTATTCTAGTGATGCACCTCGTACATATCCTAAAGTAGAATCCGGAGCTAATTTTTCTAGATCGGCACCCTTTACTGGATCTCATGGTGATCAAAACATGGGTATTCGTCATCCCCAATCTGAGACTTCAAGGCCCTTGCCAAACTCTTATGCTCGTGCACCTCAGCCTATGTATCGGCAACCATCTCCAATGTACACTAACAGAGGGCCAATTGGAAAAAATGAAGGTGCCCCCAGGATAATTCCAATAGCAGCATTGAATCCTTACCAGAATATGTGGACGATTAAAGCCAGGGTAACAGCTAAGGGAGAACTCAGGCACTATAACAATGCTCGAGGTGATGGCAAGGTATTTTCATTTGACCTTTTGGATTCTGATGGTGGGCAAATTCGGGCAACTTGCTTCAATAGTGTGGCTGATCAGTTCTATAATTTGATTGAAGCTGGTAAGGTATACCTAGTTTCCAGGGGAAGCGTAAAGCCAGCTCAGAAGAATTTCAATCACCTTCCCAATGATCAAGAGTTAACCCTTGATATGACATCCATCATACAACCATGCCCTGATGATGATAACTCAATTCCAAAGCAGACTTTTAATTTTCGGCCCATTAGTGAAATTGAAAGTTTGGAAAGCAACACCATTGTGGATGTGATTGGTGTGGTGACTTCAATTAGTCCTACAGCTTCAATCATGAGAAAAAATGGTACCGAAACTCAGAAGAGAACACTCCAGTTGAAAGACATGTCTGGTCGAAGTGTCGAGTTAACTTTGTGGGGAAATTTTTGCAACGTGGAAGGACAAAGGCTGCAAACTATTTGTGATGATGGGAAATTTCCAGTTTTGGCTACAAAAGCTGTCAGAATTAACGATTTCAATGGAAAGTCTGTTGGGACTATAATGACTAGCCTACTGTTCATAGAGCCTGATTTTCCAGAGGCTTACACACTGAAAAGATGGTTTGAAAAGGAAGGGAAGAATGTCCCAACTCTCTCTATCTCTAAAGATACATCTAGTTTTCCTAAGAATGATAATCGGAAGACTGTATCTCAAATTAAAGACGAGAAGTTAGGGACTTCGGAGAAGCCTGATTGGATATCTGTCTGTGCAACTATTTCATTCATGAAGTATGATAACTTCTGTTACCCAGGATGTCCTATCATGATAGGGGATAGGCAATGTAACAAAAAAGTGACTAATAATGGTGATGGAAAATGGATTTGTGATAGGTGTAACCAATCTGTTGACGCTTGTGATTATAGGTACATACTGTCATTCCAGATAATGGATCACACAGGTGTAACATGGGTTACTGCTTTCCAGGAGAGTGGTGAGGAGATAATTGGCCTGCCTGCAAAAGATTTGTATTATCTGAAGTATGAAGAGCAAAATGATGAAAGATTTGCTGAAATCATCCGGAAGGTTCTCTTCTCCGAGTATGTGTTCAAGTTGAAAGTAAAAGAGGAAACATTCAGTGATGAACAACGTGTTAAGGCAACTGTGGTTAAAGCAGAAAAGGTAAACTTTGCATCTAAATCCAGAGTTAGTTTGGAATTGATTGATAAACTCTTGACTGGGAAATCAGAAGGTGCTACCACCGTTACCAACTCATTATCCGGTAATACTGGACTGGGGAGTGTTGAAACTGGTCAAGTAATGCCACCGGCTTATAACCCAATAAAGAGTAGCACTAATAGCAGTAGAGATTTTGGGATGCCAGCAAATCAAGTGGGTCAACAATATGGAAATCAATATGGCAATTTTGCTTCAGCAGGTGCTCCTGGTGCATATACATCATGCACCAACTGTGGAGGTTCTGGTCATGCTTCTATACTTTGCCCAAATGTTAGAAATCCGGCTGGACAGTCTTCAGGAGGGGGCTTTTCCAACAGGGTATCATATGGTGGATCAGGTGGTGGTGCTTCTGGTGAATGCTTTAAATGCCATCAACCTGGCCACTGGGCAAGAGACTGTCCTGGTTCCAGTGCAGCAACTGCATCATATGGAAGCAATACAATGCAGGGAAGATATGGAGGATATTGA 2610 0.4276 MAGSLTPGAIKEICGANCSSSLKPVLQVIDLKLVQSQQANNTERYRLILSDGSFYQQGMLATQMNELVHSGKLQKGSVVRLTQFICNDVQNRKIIVIIDLDVVVEKCELIGEPVSLPKDGSVESGTGQSGVTPGNSQSLNNRSHSGGMASRPNVGGMAARPNMAIPSPDHPRMNAPASSAYSGISNTGSSYSSDAPRTYPKVESGANFSRSAPFTGSHGDQNMGIRHPQSETSRPLPNSYARAPQPMYRQPSPMYTNRGPIGKNEGAPRIIPIAALNPYQNMWTIKARVTAKGELRHYNNARGDGKVFSFDLLDSDGGQIRATCFNSVADQFYNLIEAGKVYLVSRGSVKPAQKNFNHLPNDQELTLDMTSIIQPCPDDDNSIPKQTFNFRPISEIESLESNTIVDVIGVVTSISPTASIMRKNGTETQKRTLQLKDMSGRSVELTLWGNFCNVEGQRLQTICDDGKFPVLATKAVRINDFNGKSVGTIMTSLLFIEPDFPEAYTLKRWFEKEGKNVPTLSISKDTSSFPKNDNRKTVSQIKDEKLGTSEKPDWISVCATISFMKYDNFCYPGCPIMIGDRQCNKKVTNNGDGKWICDRCNQSVDACDYRYILSFQIMDHTGVTWVTAFQESGEEIIGLPAKDLYYLKYEEQNDERFAEIIRKVLFSEYVFKLKVKEETFSDEQRVKATVVKAEKVNFASKSRVSLELIDKLLTGKSEGATTVTNSLSGNTGLGSVETGQVMPPAYNPIKSSTNSSRDFGMPANQVGQQYGNQYGNFASAGAPGAYTSCTNCGGSGHASILCPNVRNPAGQSSGGGFSNRVSYGGSGGGASGECFKCHQPGHWARDCPGSSAATASYGSNTMQGRYGGY 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03347 869 MobiDBLite consensus disorder prediction 521 543 - -
Vimu7g03347 869 PANTHER REPLICATION FACTOR A 1, RFA1 283 703 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vimu7g03347 869 Gene3D - 269 379 IPR012340 -
Vimu7g03347 869 Pfam Replication protein A OB domain 393 496 IPR031657 -
Vimu7g03347 869 MobiDBLite consensus disorder prediction 115 253 - -
Vimu7g03347 869 MobiDBLite consensus disorder prediction 121 148 - -
Vimu7g03347 869 Gene3D - 381 520 IPR012340 -
Vimu7g03347 869 CDD RPA1_DBD_A 272 374 - -
Vimu7g03347 869 CDD RPA1_DBD_B 404 511 - -
Vimu7g03347 869 CDD RPA1N 8 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Vimu7g03347 869 MobiDBLite consensus disorder prediction 521 535 - -
Vimu7g03347 869 SUPERFAMILY Retrovirus zinc finger-like domains 818 850 IPR036875 GO:0003676|GO:0008270
Vimu7g03347 869 SMART c2hcfinal6 788 804 IPR001878 GO:0003676|GO:0008270
Vimu7g03347 869 SMART c2hcfinal6 833 849 IPR001878 GO:0003676|GO:0008270
Vimu7g03347 869 FunFam Replication protein A subunit 269 379 - -
Vimu7g03347 869 Pfam OB-fold nucleic acid binding domain 283 370 IPR004365 GO:0003676
Vimu7g03347 869 Gene3D - 752 856 - -
Vimu7g03347 869 Pfam Zinc knuckle 833 848 IPR001878 GO:0003676|GO:0008270
Vimu7g03347 869 MobiDBLite consensus disorder prediction 178 197 - -
Vimu7g03347 869 NCBIfam replication factor-a protein 1 (rpa1) 238 710 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vimu7g03347 869 CDD RPA1_DBD_C 538 711 IPR047192 -
Vimu7g03347 869 ProSiteProfiles Zinc finger CCHC-type profile. 834 848 IPR001878 GO:0003676|GO:0008270
Vimu7g03347 869 MobiDBLite consensus disorder prediction 204 239 - -
Vimu7g03347 869 Gene3D - 3 117 IPR012340 -
Vimu7g03347 869 FunFam Replication protein A subunit 521 712 - -
Vimu7g03347 869 FunFam Replication protein A subunit 4 117 - -
Vimu7g03347 869 Pfam Replication factor-A C terminal domain 554 703 IPR013955 -
Vimu7g03347 869 SUPERFAMILY Nucleic acid-binding proteins 534 713 IPR012340 -
Vimu7g03347 869 SUPERFAMILY Nucleic acid-binding proteins 388 517 IPR012340 -
Vimu7g03347 869 SUPERFAMILY Nucleic acid-binding proteins 270 383 IPR012340 -
Vimu7g03347 869 FunFam Replication protein A subunit 382 520 - -
Vimu7g03347 869 SUPERFAMILY Nucleic acid-binding proteins 1 111 IPR012340 -
Vimu7g03347 869 Gene3D - 521 712 IPR012340 -
Vimu7g03347 869 Pfam Replication factor-A protein 1, N-terminal domain 5 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03347 Vimu-Chr7 28329052 28332305 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03347 1 815 Core DNA Replication Machinery Family AT5G45400 51.261 0.0 837
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03347 K07466 - gmx:100778597 1290.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03347 7 28329052 28332305 Vimu7g03347 7 28329052 28332305 ECH