Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03339 ATGGCCGAAGCTTTGTTGGGCTCTGTGATTGAAAATTTGGGATCTTTTGTTCAAGACCAACTTGGAACTTACTTGGGTGTTGAACAACAAATTCAGAAGCTTTCCAACAACCTCACCGCAATTCGTGCTGTCCTCAGAGATGCGGAGAGAAAGCAAATTACAAGTGAAGTCCTCAAGAATTGGCTGCAGAAACTTACAGATGCAGCATATGTGTTGGATGATATCTTGGATGAATGTTCAATTCACTTCACAAAGATGCCCTCTGATGATGGACATACTTCCAGCCTATCCCGTCTCCATCCTAAGGACATTCTCTTTCGTTTCAATATTGGCAAGAGGATGAAAGACATCAGCCAAAGATTTCATGACATTCATGAAGAAAAGAGCAGGTTTAATTTAGAACATGGTGTCACAGAGGTGCAAGCAGTGGATGATGATTGGCGCCAAACTAGCTCTGACATTACAGAACCTGTAGTTTATGGCAGAGACCAGGATCGAGAGCAAATTGTGAAGTTTCTTCTGGAAGATGCCAGTAACAGTGAAGAGCTCTCTATCTTTCCCATAGTTGGTATGGGTGGACTTGGAAAAACAACATTAGTAAAGCAGGTTTTCAATGATCACAGGGTATGCAAACATTTTGACTTGACAATTTGGGTTTGTGTTTCTGATGATTTCAACACCATGACAATACTACAATCCATCATAGAATGCATCACCGGACAAAATCCCAATCTCAATAGCTTAGAAGCAATGCGGAAAAAGGTTGAAGAAGTGTTGCATGGGAAGATGTATTTACTTGTTCTTGATGATGTGTGGAATGAAGACCCAGAGAAATGGAAGCAGTTGAAGGGAAAGTTGCAGTGCGCAAGGGCAGCAAAAGGAGCTACCATTTTGGTCACCACTCGACTCGAGGAAGTTGCTTCCATCATGCAGACGCATCCTGCTTACCATTTGAAAGAATTGCCAGGAGACGAAAGTTGGTCGTTGTTCAAATACCATGCGTTTGGACCAAATCGAGAAGAAATGGAAGAGCTCGTGGCAATTGGCAAAGAGATCGTGAGAAACTGCATCGGTTTGCCGCTTGCCATAAAAACACTGGGAAGCCTCTTGCGTGATCAAAGTGAGGTAAGACAATGGATAAATGTAAAGGAAAGTAGTTCTGCGACAGGTGAGGAAAATTCTATTATGCGTGCTTTGAAACTTAGCTATTCTAATTTGGAGTTGTCTTTGAGGAGATGTTTTTCATTTTGTGCAATTTTCCCCAAAGATTTTGAAATAGATAAGGAAGTATTGATTCATCTCTGGATGGCTAATGGGTTTATTGAAAATGAAAGAAATATAGAAGTGGAGGATGTTGGAAATAAAGTGTGGAATAAATTATACCGTAGATCATTTTTTCAAGAAGCAAAATGTGATAAGTTTGGTATGGTGAAAAGTTTCAAGATGCATGATCTATTTCATGATCTTGCCCAGTCTATTATGGGTGAAGAATGTGCGGCTTTTGTGGAAGGAAGGTTGACTCCGTTGTCAAGTAGGGTTCACTATTTATCATCTAATGTTTCTTTTCGAGGATTGAAGCATGCTTTCAAGAAAGTTGAATCCCTGCGGACTTTTCTTGATTTGCGGTATTTTGCTGGTTATTTTGACCCGGTGTCATCAAACCATTCTCTCCGAGCATTATGCACTAGCTCTTCTTCGTTGTCCCCACTCAAGCATTTAACTCATTTGAGATATTTGAGTTTGAATTGTCATTCGAAAGCAAACTTAAATAACTTAATTTGTCAAATGCGAAAATTGCAAATTTTGAAATTGCAAAATTCAAGATATCTTCGTGGACTGCCGAAAAACTTGACGCAATTACAAGATCTAAGACATATTATGATGGATGATTGTGATTCAGTAGTAGAGACGCTTCCCAAAATTAGCAAGTTAAGGCATCTAAGAACACTAAGCATTTTCGTGGTGGGTTCAAAGCCAGGGTGTGGCTTAGCAGAGTTGCATAGCTTAAATCTGGGGGGCACCCTAAGAATCAGAGGCCTTGAGAACGTTCCGAATGAAGGGGATGCTAAAGAAGCAAATTTGATTGGTAAGAAGGAGTTGAATATCCTGCGCTTGTCATGGGATGGTAATGGTAATCCAAAAGGTAGTAATGTAAGTGTGGAGAGAGTACTGGAAGCCCTAGAACCTCCCTCAACTCTCAAGAGTTTTGAGATGAATGGATATCAGGGAAGGCAGTTTTCGAGTTGGATGAGAAATAGTGGAGTTTTGAGAGACTTGGTGGAAGTTAAGCTCTTGGGCTGTGAGAACTGTGAGGAGCTTCCCCCACTTGGTAAACTTCCACACTTGAAAAGGTTAAAGGTGAGTGGAATGAAAAATGTGAAGTGGATAGATGGTGAGACGTATGACGGTGTGGAGGAGAAGGCATTTCCATCGCTGGAGAAACTGACCGTGAGAAATTTACCAAACTTAGAGAGAATGTTGAGGGAGGAAGGAGTAGAGATGCTCCCTCGTCTTTCCAAATTAAGAATTGATGGTGTGTTGAGCTTTAAAGTCCCACGTCTTCCTTGTGTCGAGACACTTCATGCTACAGGAATTGAGGATGTGACTTCTTTCATGGAAGGGGTTGGGGAGAATATGGCTTGTCTAAAGACCTTGAGCATTTACTGCATTAAAGGAGTGGTGGTATTACCCGACGAATTCAGGAGGTTGGGTGCACTACAGGTACTATACATTGGTGAATGGTATGATCTGGAGTATTTTCCAGAACACGTGATGGAAGGTCTAACTTCTCTTCGAACTTTGTCCATTGAATTCTGTGAGAAATTGAAATCATTGTCTGAAGGTGTGGGACATTTGGCTTGTCTTGAGAGATTGACGATCAGTAAATGTCCAGAGCTGGTTCTACCAAGCAATATGAGCCAACTAACTGCCCTGCGGAAGGTTTCAATCAATTATTTCTGCACATTACCAGATGGCTTACAACGTGTCCCCTCCCTACGAGTTTTAGATATATGCGGTTGTACTTCATTGCCGGACTGGCTGGGAGACATGACTACTCTTGAAGAATTAAGCATTCGGTATTGTGACGAGTTGAGGTCACTGCCGAGTAGCATTCAACGCCTCACCAACTTGTCTCATTTAACTATACACTATTGTCCTCATCTGAAGAAGCGGTGCAAGAGGAAAACAGGAGAGGATTGGCAATACATAAACCACATTCCAAACTTAGAGTTGTTGTCATGA 3243 0.4147 MAEALLGSVIENLGSFVQDQLGTYLGVEQQIQKLSNNLTAIRAVLRDAERKQITSEVLKNWLQKLTDAAYVLDDILDECSIHFTKMPSDDGHTSSLSRLHPKDILFRFNIGKRMKDISQRFHDIHEEKSRFNLEHGVTEVQAVDDDWRQTSSDITEPVVYGRDQDREQIVKFLLEDASNSEELSIFPIVGMGGLGKTTLVKQVFNDHRVCKHFDLTIWVCVSDDFNTMTILQSIIECITGQNPNLNSLEAMRKKVEEVLHGKMYLLVLDDVWNEDPEKWKQLKGKLQCARAAKGATILVTTRLEEVASIMQTHPAYHLKELPGDESWSLFKYHAFGPNREEMEELVAIGKEIVRNCIGLPLAIKTLGSLLRDQSEVRQWINVKESSSATGEENSIMRALKLSYSNLELSLRRCFSFCAIFPKDFEIDKEVLIHLWMANGFIENERNIEVEDVGNKVWNKLYRRSFFQEAKCDKFGMVKSFKMHDLFHDLAQSIMGEECAAFVEGRLTPLSSRVHYLSSNVSFRGLKHAFKKVESLRTFLDLRYFAGYFDPVSSNHSLRALCTSSSSLSPLKHLTHLRYLSLNCHSKANLNNLICQMRKLQILKLQNSRYLRGLPKNLTQLQDLRHIMMDDCDSVVETLPKISKLRHLRTLSIFVVGSKPGCGLAELHSLNLGGTLRIRGLENVPNEGDAKEANLIGKKELNILRLSWDGNGNPKGSNVSVERVLEALEPPSTLKSFEMNGYQGRQFSSWMRNSGVLRDLVEVKLLGCENCEELPPLGKLPHLKRLKVSGMKNVKWIDGETYDGVEEKAFPSLEKLTVRNLPNLERMLREEGVEMLPRLSKLRIDGVLSFKVPRLPCVETLHATGIEDVTSFMEGVGENMACLKTLSIYCIKGVVVLPDEFRRLGALQVLYIGEWYDLEYFPEHVMEGLTSLRTLSIEFCEKLKSLSEGVGHLACLERLTISKCPELVLPSNMSQLTALRKVSINYFCTLPDGLQRVPSLRVLDICGCTSLPDWLGDMTTLEELSIRYCDELRSLPSSIQRLTNLSHLTIHYCPHLKKRCKRKTGEDWQYINHIPNLELLS 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03339 1080 Gene3D - 321 407 IPR042197 -
Vimu7g03339 1080 SUPERFAMILY L domain-like 481 845 - -
Vimu7g03339 1080 Gene3D - 6 120 - -
Vimu7g03339 1080 PRINTS Disease resistance protein signature 185 200 - -
Vimu7g03339 1080 PRINTS Disease resistance protein signature 258 272 - -
Vimu7g03339 1080 PRINTS Disease resistance protein signature 356 370 - -
Vimu7g03339 1080 PRINTS Disease resistance protein signature 994 1010 - -
Vimu7g03339 1080 Gene3D Ribonuclease Inhibitor 506 847 IPR032675 -
Vimu7g03339 1080 CDD RX-CC_like 2 124 IPR038005 -
Vimu7g03339 1080 Gene3D Ribonuclease Inhibitor 848 1080 IPR032675 -
Vimu7g03339 1080 FunFam Probable disease resistance protein At1g63360 403 492 - -
Vimu7g03339 1080 Pfam NB-ARC domain 163 405 IPR002182 GO:0043531
Vimu7g03339 1080 Gene3D - 148 315 IPR027417 -
Vimu7g03339 1080 SUPERFAMILY RNI-like 835 1069 - -
Vimu7g03339 1080 Pfam Rx N-terminal domain 6 88 IPR041118 -
Vimu7g03339 1080 Coils Coil 31 51 - -
Vimu7g03339 1080 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 143 417 IPR027417 -
Vimu7g03339 1080 FunFam Probable disease resistance protein At1g61300 141 315 - -
Vimu7g03339 1080 Gene3D - 409 492 IPR036388 -
Vimu7g03339 1080 PANTHER DISEASE RESISTANCE PROTEIN RP 33 823 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03339 Vimu-Chr7 28270714 28273956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03339 188 844 WRKY Transcription Factor Family AT5G45050 22.809 1.04e-07 54.3