Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03326 ATGGTTAAGCATAACAATGTCATCCCCAGCGGACACTTCCGCAAGCATTGGCAAAACTATGTGAAAACATGGTTTAATCAGCCAGCACGGAAGACTAGAAGACGATTGGCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCCACTGCAGGACCCCTTAGACCTATTGTACATGGTCAAACTTTGAAATACAATATGAAAGTTAGAGCTGGCAGAGGATTTTCTCTTGAAGAGCTGAAGGCTGCTGGTATTCCCAAAAAGTTTGCTCCAACAATTGGAATTTCTGTTGACCACCGCCGCAAGAACCGTTCTTTGGAAAGTCTGCAAGCCAATGTGCAGAGGCTGAAAACATACAAGGCCAAATTGGTTGTCTTCCCAAGAAGGGCACGCAAGGTCAAGGATCTAAAAAAAGTGTTTGCCCCTTCGCATTCTGTTAATGTTTTGCAGGCTGGCGATTCTACTTCTGAAGAACTTGCAAATGCAACACAAGTACAGGGTTCATACTTACCTATTGCTAGGGAGAAGCCGTCTGTTGAACTTGTGAAGGTCACCGATGAAATGAAGGCATTCAAAGCTTATTACAAGCTAAGACTTGAGCGCACAAACAAGCGCCATCACGGTGCCAGACTGAAGAAGGCTGCTGAGGCAGAGAAGGAAGACAAAAAGTGA 672 0.4509 MVKHNNVIPSGHFRKHWQNYVKTWFNQPARKTRRRLARQKKAVKIFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKFAPTIGISVDHRRKNRSLESLQANVQRLKTYKAKLVVFPRRARKVKDLKKVFAPSHSVNVLQAGDSTSEELANATQVQGSYLPIAREKPSVELVKVTDEMKAFKAYYKLRLERTNKRHHGARLKKAAEAEKEDKK 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03326 223 MobiDBLite consensus disorder prediction 204 223 - -
Vimu7g03326 223 PANTHER 60S RIBOSOMAL PROTEIN L13 1 223 IPR001380 GO:0003735|GO:0005840|GO:0006412
Vimu7g03326 223 Hamap 50S ribosomal protein L13e [rpl13e]. 45 128 IPR001380 GO:0003735|GO:0005840|GO:0006412
Vimu7g03326 223 FunFam 60S ribosomal protein L13 182 223 - -
Vimu7g03326 223 Pfam Ribosomal protein L13e 7 201 IPR001380 GO:0003735|GO:0005840|GO:0006412
Vimu7g03326 223 ProSitePatterns Ribosomal protein L13e signature. 70 84 IPR018256 GO:0003735|GO:0005840|GO:0006412
Vimu7g03326 223 Gene3D - 183 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03326 Vimu-Chr7 28204871 28206018 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03326 2 208 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 79.227 4.77e-121 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03326 K02873 - gmx:100805957 366.311