Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03325 ATGGCTAAAGAGAAACAACAGCAGCAAGAAGAAGACTATCACAAGATGTTGCGTTCGTATTTAGGGCTCAGCTTCTCCATGTTTCTGGCCACGCTGGCAAACAACTCGGTGCCCGCGCTACAGGGGAAGGTGCGCATGCTGTCGCTGCGGGCGGTGGAGGCGGCGGAGGAGCTGCGCCAGATGAAGTCGCGGCGGCAGGAGGACTCGAAGGCGAACGCTCGAGTGGTGGAGATCTTCGCGTCGCACCGGAACGCATGGCAGGCGGAGGAGAAGCGCCTGTTGCAGCAGATCGAGGCGGCGGCGGAGGAGATCGCGCGCCTTAGGGGGCGCGTGGCAGAGCTGGAGGAGTGCATGGCGCGTGCGGAGAAGGAGGTGGGGGAGCGGGACGAGATGATTGGGTTCATGTCGCGGAGGATAGAGGAGGAGGGATTGGGTGGGAGGGAGCACTACGGTAAGAAGAGTGGGGAGTGGTTTCAGAAGGAGGTGGAGGAGGAGGAATTGGTGGGGTCCACTAGGAGTTTGGAAGAGGAGGTTGAGGTTATCTATGAACAGCATAGTGAACATTTTGGGAACAATGGCTTTGATTCTGAGTTTATGGCCTCTGCTTCCAAGTTCTGGGCTGAGAAAGCCTCCCTTTGGCAGGATGTCCAGTACGAATCCCTTGAATCAATATATAATACAAAGCATTTTGTTGCAAGAAGGGAGTCTCCCTGGAAGGTAGATGGTGATTCTGCTGGAGTTTCCTCTAAACTTAAATTACTTGAGCAAGATTTATTAAATCTAGAGAAGATTGGTAAAAATGATCCTTCCAAGGCGTCGTCGTTGATTAAGAAGCAGGCAAAGAGATATCAAGGGCTTTCAGAAAAAATAGATGATTTGTGCCGAAGAATAGCTAATGATCCCTGCGAGCCTTCCCTCAGTTCAGAATTCCGAACCCAAACTCAAACAGAGTTTTTATTGGAAGCATTTCGGCTTCAACAGGGGGTATCTGAAACTGGACAGAACCTAATGGCATTGCAAACTGAAATTGGGAAGAGCAATTACAGGGAGGAGTTGAGAAACGAGACCACACTAACCACAAGACGGTCTTTAGACTCTATGAGGAACAACTTCAAAGAAATCCAGCGAAATCTGGAGATATGGTTGGCCAGAATTATTGGCGATCTTGAGGGGATTCTTTCAAGGGAAGGGGCATCTCGTTCATCATCAAATCAAGAAAGAGACAGAAACATGAATCAGAAGTCATGCATTAAACAATGGCAAATCTCTTGCATTCACCGTCAAATTAATATACATATGATGACTCCGTCATTTTCGGCCGGCCACCTTCATCACCTCTTAACGCTCAACACAGACAAGTCCAACCATTTGTCCTCACTCTGCAATAACTTGGTATCCATGGACGACAACCATGGCCATCGCTTTCTTAACAACTTCGTGATTCTCCTCCTTGCAATGGGTTTATCAGCTTTATTCGTATCATTGTGCCATTTCATAGCCATTTGCTTCTGGTACCAACGCATCCAACACCAAAACCCACCGCCGACAGCGACGGCCTCCTCGGCGGTGCAGATGATTCCTACACACACGTACCACAGGAAGACAGTTCATGGCGGTGTGGTTTCCGGCGACGGCGATGAAGGTGGGACGTGTGCGGTGTGCTTGGGTGAGTTTGAGGAGGGTGAGGAGCTGAGGACGTTACCTGAGTGCATGCACTGTTTCCACGTGGCATGCATTGACACGTGGTTGTGTTCGCATTCGAGTTGTCCCGTTTGCCGGAGCATTGCCACGCCGTCTCTGGAGCATGATTTGAACGATGCGAATGAGCACCGCATACATATGACGCAGTTTTCCATTGTACAAAATGGCTTTGTGTTACTAGGGTGA 1887 0.4997 MAKEKQQQQEEDYHKMLRSYLGLSFSMFLATLANNSVPALQGKVRMLSLRAVEAAEELRQMKSRRQEDSKANARVVEIFASHRNAWQAEEKRLLQQIEAAAEEIARLRGRVAELEECMARAEKEVGERDEMIGFMSRRIEEEGLGGREHYGKKSGEWFQKEVEEEELVGSTRSLEEEVEVIYEQHSEHFGNNGFDSEFMASASKFWAEKASLWQDVQYESLESIYNTKHFVARRESPWKVDGDSAGVSSKLKLLEQDLLNLEKIGKNDPSKASSLIKKQAKRYQGLSEKIDDLCRRIANDPCEPSLSSEFRTQTQTEFLLEAFRLQQGVSETGQNLMALQTEIGKSNYREELRNETTLTTRRSLDSMRNNFKEIQRNLEIWLARIIGDLEGILSREGASRSSSNQERDRNMNQKSCIKQWQISCIHRQINIHMMTPSFSAGHLHHLLTLNTDKSNHLSSLCNNLVSMDDNHGHRFLNNFVILLLAMGLSALFVSLCHFIAICFWYQRIQHQNPPPTATASSAVQMIPTHTYHRKTVHGGVVSGDGDEGGTCAVCLGEFEEGEELRTLPECMHCFHVACIDTWLCSHSSCPVCRSIATPSLEHDLNDANEHRIHMTQFSIVQNGFVLLG 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03325 628 PANTHER RIBONUCLEASE P PROTEIN SUBUNIT P38-LIKE PROTEIN 119 237 - -
Vimu7g03325 628 Coils Coil 276 296 - -
Vimu7g03325 628 SUPERFAMILY RING/U-box 550 599 - -
Vimu7g03325 628 Coils Coil 83 124 - -
Vimu7g03325 628 SMART ring_2 551 592 IPR001841 -
Vimu7g03325 628 ProSiteProfiles Zinc finger RING-type profile. 551 593 IPR001841 -
Vimu7g03325 628 Pfam Ring finger domain 550 593 IPR001841 -
Vimu7g03325 628 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 503 598 IPR013083 -
Vimu7g03325 628 Coils Coil 364 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03325 Vimu-Chr7 28183897 28189858 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03325 476 595 C3H Transcription Factor Family AT1G20823 41.304 1.53e-23 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03325 - - vum:124829688 722.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03325 7 28183897 28189858 Vimu7g03325 7 28183897 28189858 ECH