Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03321 ATGGCTATGCCGTTGCCTATTTTATGTGTGGAAGATGGTGTGGCAATTTTACGCTTCTCTGAAATCTTTGGCATTCATGAACCTCTCAGAAAGGGAGAAAAGAGAGAACACCGGCCACCTATTACTAGAGGGCTGCCAATGGTGAGATTTGATTGGAAAAATGAGTGCTATCTTTTTGCTGTGTTTGTATGTGGGGCTTCTGTTCTAATGGGCATTTTACCTGTCATGTTTACAGATAGATACAAGTCTTTGGATTTTATTGATGATTTTGTAGAAGAGGATGAAGAGGAATTCCTCAAGGGTTCCTCCCAGAGTCTCTCACAGACTAAACAAGTTTCTGTAGTTCATAATGATGTATCAGAAAGCAACGATGTTGACTTGGAGTTTCCAAAATTTGGGTTTCTGCATACTGAGCCCTCAGTGGCCAGGAAAGATGATCATCAATCGAAGGACTCGTGTCATAGTGCTGAACCAATGAAAGGGGATTTTGAAGAAGACCTTTCCTGGAAAGATCATCCTTTCATATGGACCAACTTTTATCCTCTTGATCAGCAAGACTGGGAAGATGAAATCATATGGGGCAATTCTCCTATTCCAAGTAATAATAATATTGAAAGCTGTGAAGTTTCTGGACCTGAGTTGGGAGTTTCTGGTGGCAGTGAAATAGAAATTGAAAGTGGGATCCAGAATATTCAGCTGGAGCCTCACAAGATACTGGAAGATAAAGATCATAATGTTTTGCTCAGCTCTCCTGTCTCGTTGGAGGCCTTTGGCTCAAGGGATTCTTCTGAAGCTAAAACCAACCTAATATCTAGAAGTCTTTTTCATCCCCAACTTTTAAGGTTAGAATCCAGATCTGAAGTGGACAATTCTAGACTTCCAGATGGAAAAGAGGGGGAGATATCTAAACATAATCAAAGTGGTCAAATTACACGTTTTAGCAAGGCTATATCACAAAATAGAGACATGATGGAGGGTTCCTGGTTAGACGAGATAATATGGGAGGAGCTTGATCAGCCTGTGGTGAAACCAAAGCTTATCTTTGATCTTCAGGATGATCAAATGCACTTCGAAGTTTTGGATAGCAAGGATGGTGCACATCTTCGTCTTCATGCTGGGGCGATAATTTTAACTCGTTCTTCAAAATCAAGCAGTGGGGACTCATCTGAAGTACCAGGACATGGTCAATATGGATGGCGATATGTGTCTAATGACAAACATTATTCAAATCGTAAAACTTCTCAACAATTGAAATCAAATTCCAAAAAACGCTCGGCACATGGTGTCAAAGTTTTCCACTCTCAACCTGCGTTGAAGCTGCAGACAATGAAATTGAAGTTGAGCAATAAAGATATTGCAAATTTTCACCGGCCAAAAGCATTATGGTATCCCCATGACAATGAGGTTGCTGTCAAAGAACAAGGGAAATTGCCAACACAAGGACCCATGAAAATTATTATAAAGAGTTTGGGTGGCAAGGGGAGTAAATTGCATGTGGATACTGAAGAAACTCTCTCAACTGTTAAAGCAAAAGCTTCCAAAAAGCTAGGGAGGGAGCTTGAAGATCAGAAGTCACTGGCTGAACAAAATGTTCAACCAAACTCCTTGTTACATCTTGTTCGTTCAAAGATACATTTGTGGCCAAAAGCACAGAGGGTTCCTGGGGAGAACAAGTCCTTGCGTCCTCCTGGGGCATTCAAGAAAAAATCTGATCTGTCTGTAAAAGATGGACATAACACAGTGCAAACTGGTGATGAGGAAGGCAACATCGGCATGATGGTCATGAGTGTTGTGGTAGCTCACAATGGTGAGGCCAGTGTTCGTAGCAGCAGCATTAGTGCTTCGATGGCTATTGATAACGAGACTGATGGTTGTTTGACAACAGTAGCAGAACAAAAGGGCCATGTGATTTGGGCTTCTTTTTCAGCGGAACAATGTGGTGCATATCCTGCAATTTCATTAGCAACCATGCAATCAGAGTACTGTCTCTGCCTCCTGCAATCTGCAATGCGCATGTGTCCCTCAAACTCGCAGGATGGGAAAAAAGAGAAGCACAACTATGGGGAGACTAATATTCTCCTAAATAAACAAAATGAAGAAGAACGAGAGCAAATGTCTTTGTATGCTCTATACTCTTCAAAGCAATATTGA 2151 0.4138 MAMPLPILCVEDGVAILRFSEIFGIHEPLRKGEKREHRPPITRGLPMVRFDWKNECYLFAVFVCGASVLMGILPVMFTDRYKSLDFIDDFVEEDEEEFLKGSSQSLSQTKQVSVVHNDVSESNDVDLEFPKFGFLHTEPSVARKDDHQSKDSCHSAEPMKGDFEEDLSWKDHPFIWTNFYPLDQQDWEDEIIWGNSPIPSNNNIESCEVSGPELGVSGGSEIEIESGIQNIQLEPHKILEDKDHNVLLSSPVSLEAFGSRDSSEAKTNLISRSLFHPQLLRLESRSEVDNSRLPDGKEGEISKHNQSGQITRFSKAISQNRDMMEGSWLDEIIWEELDQPVVKPKLIFDLQDDQMHFEVLDSKDGAHLRLHAGAIILTRSSKSSSGDSSEVPGHGQYGWRYVSNDKHYSNRKTSQQLKSNSKKRSAHGVKVFHSQPALKLQTMKLKLSNKDIANFHRPKALWYPHDNEVAVKEQGKLPTQGPMKIIIKSLGGKGSKLHVDTEETLSTVKAKASKKLGRELEDQKSLAEQNVQPNSLLHLVRSKIHLWPKAQRVPGENKSLRPPGAFKKKSDLSVKDGHNTVQTGDEEGNIGMMVMSVVVAHNGEASVRSSSISASMAIDNETDGCLTTVAEQKGHVIWASFSAEQCGAYPAISLATMQSEYCLCLLQSAMRMCPSNSQDGKKEKHNYGETNILLNKQNEEEREQMSLYALYSSKQY 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03321 716 MobiDBLite consensus disorder prediction 286 302 - -
Vimu7g03321 716 MobiDBLite consensus disorder prediction 554 586 - -
Vimu7g03321 716 Gene3D - 465 542 - -
Vimu7g03321 716 MobiDBLite consensus disorder prediction 409 429 - -
Vimu7g03321 716 SMART ubq_7 483 542 IPR000626 GO:0005515
Vimu7g03321 716 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 4 578 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Vimu7g03321 716 SUPERFAMILY Ubiquitin-like 453 540 IPR029071 -
Vimu7g03321 716 Pfam Protein of unknown function (DUF3591) 402 580 IPR022591 -
Vimu7g03321 716 MobiDBLite consensus disorder prediction 286 308 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03321 483 540 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 38.571 1.90e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03321 K03125 - gmx:100783866 906.36