Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03318 ATGTCTCTACTAAGCCGATTCTTCTACAAGCGTCCCCCTGATGGCTTACTCGAATTTGCAGACAGAGTCTATGTATTCGATTCCTGCTTCTCCACCGAAGCCCTCCCAGAGGGAATGTACCAGCTCTACCTCCGCCAAATTCTCTCCGACCTCCACGAAGACTTCCCGGAATCTTCCTTCCTCGCACTCAACTTCCGCGACGGTGACTCACGCAGCCGCTTCTCGCGCCTCCTGTGCGAACTCGACGCCACCGTCATCGACTATCCGAAGCAGTACGAGGGCTGCCCCCTCCTCCCTCTCTCCCTCCTCCACCACTTCCTTCGCCTCTGTGACACCTGCCTCGCCGACCCCGCCGCCGTGATCCTGTTCCACTGTGAGCGCGGCGGCTGGCCCCTCCTCGCCTTTCTCCTTGCTGCTTTCCTCGTTTTCCGGAAGGCGCAGAGTGGGGAGCGGAAGATTCTGGAGATGGTTCACAGGGAGGCGCCGAAGGGGCTGCTGCAGCTGCTGTCGGCGCTCAACCCGATGCCGTCGCAGCTGCGTTATGTGCAGTATGTGGCTCGGAGGAACATTGGTGCGGAGTGGCCGCCGCCGGAGAGGGCGCTATCTCTGGACTGTGTGATACTCAGAGGGGTTCCTGGGTTTGATGGGGGGAATGGATGCAGGCCGTTGTTTAGGATTTTTGGGAGGAATTTGCTTAGTAAAGGCGGGCTTTCCACGCGGATGATTTATAATATGCATAAGAAGAAGAAGACTTTGAGGCACTACAGACAGGCAGACTGTGATGTGATTAAGATTGATATTCAATGCTTAGTGCAAGGGGATGTGGTGTTGGAGTGTGTGCATTTGGATTTGGATCCGGAGAGGGAGGTGATGATGTTTCGAGTGATGTTCAATACAGCATTCATTCGGTCAAACATTTTGATGCTGAATGCTGAGAACTTGGACATTCTGTGGGATTCCAAGGAGCGGTATCCAAAGGGCTTCCGGGCTGAGGTATTGTTTGGGGAGGTTGAAAACATAAGTCCTCAAAGGGCTCCCACAAGTATTTTAGATGGTGAGGTGAAAGGTGGATTACCCATTGAGGCATTTTCAAGGGTTCAAGAACTTTTCAGTGGTGCAGAATGGATTGACAGTGGTGATTCTGCTGCTGTATGGCTTCTTAAGCAGCTTACAGTCTTAAACGACGCCAAAGAGTTTTCAAGGTTTCAGGGTAGAGGAAGCTGGTATTCATCTCCTGCTGACTCTGAAGAAGAAAATAATGAGTCCAGCACTGCTGATAGTTCAGACGAGGCCTTTGATGTTATTCCCAGGTCTTATGCTGATCCTTCAAAATTATTTACATCTGACACACCTGATTTGGTCCATTTAACTTTTGAAAACAACGGTGGAGATTATGTAAATCTAACTTCAAGAACACCTGATCAGTCACTAACAGATGATGTTTCATTGCCTCACCATGCTCTAACTAAGGAATCTTCTCCTTGTTTGTCTCCACCTTCACCTTCACATTTTCCCGCTATTCAACCTCTACCGACCCTTCCACCTCAATCGTCAATACCTATACAGCCAAGTTTAGCTCCTCCCCATCCTCCCCCACCTCCGCATGAATTAGTTCAGGATCTGGACAATGCTTCTACATTGCCTTCACCTCCTCTTCCACCCCCTCTCCCTCCTATAGGTGGGGATGCCGATAGCACTCCTGGTTTACCTCCATCTCATCTAGGATCTGTACAAACAAGTTCAGCCCCTCCACCACCTCCTCCTCCCCCACTTCCACTTGGACCTGTACAAACAACTTTAGTCCCACCACCTCCTCCTCCACCACCACCTGTGAGAACAAATTTAGTCCCACCACCTCCGCCTCCACCTCCAGGTCCTTTACGAACAGCACCTCCACCACCTCCTCCTCCTCCTCCTCCTTTAGGTCTTATACAAACAGGTTCAGCCCCACCACCACCTCCTCCTCCTTTAGGTCCTTTGCAAACAGGTTCAGCCCCACCACCACCTCCACCTCCACCTCCTTTAGGATCTGTACAAACAGGTTCAGCTCCACCACCACCACCTCCACCACCTCCAGGACCTGCACAAACAAGTTCAGTTCCACCTCCACCTCCTTCAGGTCCGACACAATTAGGTTCTTTACCCCCAACAACTCCAGGTCTTGTACAAACAGGTTCTGCTCCACCACCACCTCCACCTCCTCCTCCTCCAGGTCATGTACAAACAGGTCCAGCTCCACCTCCACCTCAACCTCCTCCAGGTCCTGTACGAGCAGGTTCAGCTCCACCACCACCTCCACCTCCTCCAGGTGTTGTACAAACAGGTTCAGCCCCACCACCTCCTCCTCCTCCTCCAGGTCCTGTACAAACAGGTTCAGCCCCACCACCTCCTCCTCCTCCTCCAGGTCCTGTACAAACAGGTTCAGCCCCACCACCTCCTCCTCCTCCTCCAGGTCCCGCACGAACAAGTTCAACTCCACCAGCACCTCCTCCTCCTCCAGGTCCCATACGAACAGGTTCAACTCCACCAGCACCTCCTCCTCCTCCAGGTCCTATACGAATAGGTGCAGGTCCACCAGCACCTCCACCTCCTCCAGGTCCTGTACGAACAGGTTCAGCCCCTCCACCACCTCCTCCTCCAGGTCCTATACGAACAGGTTCAGCTCCACCACCACCTCCTCCGCCAAGTGTACAAACAGGTTCAGCTCCACCACCACCACCACCATTGGCACCAAGGCCCCCAGGTGCTCCTCCTCCTCCTCCACCTGGTCGTGGTGCATCTCCAATGCCACCTGCAGTTACAGCCACTAGTGTGGCACCACCTCCTGGCAAAGCTTCAACAACAAATGTTGGTAGAGGTCGTGGTACTGGTGTTACTGCTAATGCTCCAAAGAAAACTTTACTAAAACCCCTACACTGGGTGAAAGTCGCTCGAGCAGCCAAGGGAAGTCTATGGGCTGATTCACAGAAACAGGATAGTGGAACAAGGGCCCCTGAGATAGATATATCAGAACTTGAGACCCTGTTTTCAGCAGCATCTACTTCTGATGGGAGCAGTACTAGAGGTGGAGTTCGGCGTGGTCCTAATATTAACAAGCCGGAGAAAGTACAACTGGTTGACTTGCGTAGAGCATATAATTGTGAAATAATGCTCTCTAAAATCAAAATTCCTTTGCCAGATATGCTTAAAGCTGTATTGGCATTGGATTCTTTGGTTCTTGATATTGATCAGGTTGAGAATCTCATCAAGTTCTGTCCAACAAAGGAAGAGATGGAAATGTTAAAGTTTTTTATGGAGCTGATGAAGGTTCCGCGTGTGGAATCCAAATTAAGGGTTTTTGCTTTTAAAATCACCTTTTCTTCTCAGGTGAACGATTTGAAAGTAAATTTGAACACAATCAACAATGCAGCCAGAGAGGTGAAAGAATCTGGGAAATTGCGTCAAATAATGCAGACTATTCTTACTCTGGGAAATGCCTTGAATCAAGGAACAGCACGGGGATCAGCTGTTGGATTCAAATTGGATAGCCTTCTTAAATTATCTGACACTCGTGCAAGAAATAATAAAATGACTTTAATGCATTATTTGTGTAAGCTTCTTGCTGAGAAAATGCCAGAACTGCTAGATTTTGATAAGGATCTTGTCCATTTGGAAGCAGCTTCTAAGATTCAACTAAAAGCATTGGCCGAGGAAATGCAAGCTGTGAGTAAAGGTTTAGAGAAAGTTGAGCAAGAACTCGCTGCTTCTGAAAATGATGGTGCCATATCAACAGGATTTCGTAAGGTGTTGAAGAATTTTCTTGATATTGCTGAAGCTGATGTGAGGTCCCTTATATCATTGTATTCTGAAGTGGGAAGAAGTGCAGACTCTTTGTCCCAATACTTTGGAGAGGATCCGGCTAGATGCCCCTTTGAACAAGGTCTGATGTTCTCTACAGTCTATAGACTCCACACATGA 3957 0.4971 MSLLSRFFYKRPPDGLLEFADRVYVFDSCFSTEALPEGMYQLYLRQILSDLHEDFPESSFLALNFRDGDSRSRFSRLLCELDATVIDYPKQYEGCPLLPLSLLHHFLRLCDTCLADPAAVILFHCERGGWPLLAFLLAAFLVFRKAQSGERKILEMVHREAPKGLLQLLSALNPMPSQLRYVQYVARRNIGAEWPPPERALSLDCVILRGVPGFDGGNGCRPLFRIFGRNLLSKGGLSTRMIYNMHKKKKTLRHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFNTAFIRSNILMLNAENLDILWDSKERYPKGFRAEVLFGEVENISPQRAPTSILDGEVKGGLPIEAFSRVQELFSGAEWIDSGDSAAVWLLKQLTVLNDAKEFSRFQGRGSWYSSPADSEEENNESSTADSSDEAFDVIPRSYADPSKLFTSDTPDLVHLTFENNGGDYVNLTSRTPDQSLTDDVSLPHHALTKESSPCLSPPSPSHFPAIQPLPTLPPQSSIPIQPSLAPPHPPPPPHELVQDLDNASTLPSPPLPPPLPPIGGDADSTPGLPPSHLGSVQTSSAPPPPPPPPLPLGPVQTTLVPPPPPPPPPVRTNLVPPPPPPPPGPLRTAPPPPPPPPPPLGLIQTGSAPPPPPPPLGPLQTGSAPPPPPPPPPLGSVQTGSAPPPPPPPPPGPAQTSSVPPPPPSGPTQLGSLPPTTPGLVQTGSAPPPPPPPPPPGHVQTGPAPPPPQPPPGPVRAGSAPPPPPPPPGVVQTGSAPPPPPPPPGPVQTGSAPPPPPPPPGPVQTGSAPPPPPPPPGPARTSSTPPAPPPPPGPIRTGSTPPAPPPPPGPIRIGAGPPAPPPPPGPVRTGSAPPPPPPPGPIRTGSAPPPPPPPSVQTGSAPPPPPPLAPRPPGAPPPPPPGRGASPMPPAVTATSVAPPPGKASTTNVGRGRGTGVTANAPKKTLLKPLHWVKVARAAKGSLWADSQKQDSGTRAPEIDISELETLFSAASTSDGSSTRGGVRRGPNINKPEKVQLVDLRRAYNCEIMLSKIKIPLPDMLKAVLALDSLVLDIDQVENLIKFCPTKEEMEMLKFFMELMKVPRVESKLRVFAFKITFSSQVNDLKVNLNTINNAAREVKESGKLRQIMQTILTLGNALNQGTARGSAVGFKLDSLLKLSDTRARNNKMTLMHYLCKLLAEKMPELLDFDKDLVHLEAASKIQLKALAEEMQAVSKGLEKVEQELAASENDGAISTGFRKVLKNFLDIAEADVRSLISLYSEVGRSADSLSQYFGEDPARCPFEQGLMFSTVYRLHT 1318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03318 1318 MobiDBLite consensus disorder prediction 940 955 - -
Vimu7g03318 1318 MobiDBLite consensus disorder prediction 460 964 - -
Vimu7g03318 1318 Coils Coil 1123 1143 - -
Vimu7g03318 1318 ProSiteProfiles C2 tensin-type domain profile. 198 337 IPR014020 -
Vimu7g03318 1318 MobiDBLite consensus disorder prediction 722 928 - -
Vimu7g03318 1318 MobiDBLite consensus disorder prediction 547 561 - -
Vimu7g03318 1318 Gene3D Protein tyrosine phosphatase superfamily 15 189 IPR029021 -
Vimu7g03318 1318 Pfam Formin Homology 2 Domain 962 1306 IPR015425 -
Vimu7g03318 1318 Pfam C2 domain of PTEN tumour-suppressor protein 197 335 IPR014020 -
Vimu7g03318 1318 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1033 1306 - -
Vimu7g03318 1318 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 198 337 IPR035892 -
Vimu7g03318 1318 ProSiteProfiles Formin homology-2 (FH2) domain profile. 958 1318 IPR015425 -
Vimu7g03318 1318 Gene3D Formin, FH2 domain 958 1316 IPR042201 -
Vimu7g03318 1318 MobiDBLite consensus disorder prediction 580 712 - -
Vimu7g03318 1318 MobiDBLite consensus disorder prediction 1011 1031 - -
Vimu7g03318 1318 Gene3D - 195 340 - -
Vimu7g03318 1318 PANTHER FORMIN-J 874 1307 - -
Vimu7g03318 1318 Coils Coil 1225 1252 - -
Vimu7g03318 1318 SMART PTEN_C2_2 196 1070 IPR014020 -
Vimu7g03318 1318 SMART it6_source 527 1318 IPR015425 -
Vimu7g03318 1318 MobiDBLite consensus disorder prediction 462 479 - -
Vimu7g03318 1318 MobiDBLite consensus disorder prediction 407 431 - -
Vimu7g03318 1318 MobiDBLite consensus disorder prediction 498 537 - -
Vimu7g03318 1318 MobiDBLite consensus disorder prediction 1011 1025 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03318 Vimu-Chr7 28133395 28143989 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03318 912 1314 FH2 protein (formin) Gene Family AT1G31810 71.942 0.0 589
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03318 - - gmx:100809152 941.414
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03318 7 28133395 28143989 Vimu7g03318 7 28133395 28143989 ECH