Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03307 ATGTTCGGTGGCGGAGGGGAGGACGCGTTTGCGGCGCGGCTTGGCATGGTGACGCCGTCGCTGATGAACCCCGCGACGTCGTTGGTCATGTCCGGGGAGGTGTCAGCGGCGGTGAGGGAGGAGAGGGGACCCGCGCAGCCGCAGTGGAGCCAGCAGGAGACGCGGGAGTTCATAGCGATACGTGCGGAGCTGGAGAGGGACTTCACTGCGTCCAAGCGGAACAAGACGCTTTGGGAAGTGGTGAGTTCGAAGATGAGGGAGAGAGGGTTCAGGAGGAGCCCGGAACAGTGCAAATGCAAGTGGAAGAACCTCGTTAATCGCTATAAGGGTTGGGAGGGAATATGTTGGGATTGTGGCTTAGATTCAACTGAATGGCCCATATACAATGGACCGTGTTTGATGCAGGGCATGTCGAGAGTTGAGTCTTGGCTAACAGTCCAAGCTTTTGGTATGGTCACAACCGCTCTTGATCATATAATTTATGACGTATCTGGTTATAGGGGAAAAGAGACATCTGACCCAGAGCATAGCAGGCAATGTCCATTTTTTGAAGAATTGCATGCAGTATTTACCCAAAGGGCACATAATATGCAACGGTTGCTTCTTGAATCTGAAACTCGCTCAGCTCAAACTAAGAAAGGAGTGAAAAGATCAAGTGGAGATCGATCTTCAGAGGAACTCTCAGAAGATGACGACGAGGTTGAATATGACAGCGAAGAGGAAAAACCTTCTAGAAGCAATACCCGCAAAAGGAAAGTTGACAAAGTTGGAACGGATAAAACTTCTTCAAGGGCAAACAATCCATCGAATGCTGTCAATAGTAGTATTCAGGAAATGCTAAAGGAATTTTTCCAGCACCAGTTAAGGATGGAAATGCAGTGGAGGGAGATGATGGAGAGACGTGCTCATGAAAGACAGTTGTTTGAACAGGAGTGGAGGCAGTCGATGGAGAAGCTTGAGCGGGAGAGGTTAATTATTGAACAGGCATGGAGGGAGAGAGAAGAACAGAGGAGAATGAGAGAAGAGAGTAGGGCGGAAAAAAGGGACGCTTTATTGACGACCCTTTTGAACAAACTCATTAATGAATCTAACTAA 1095 0.4868 MFGGGGEDAFAARLGMVTPSLMNPATSLVMSGEVSAAVREERGPAQPQWSQQETREFIAIRAELERDFTASKRNKTLWEVVSSKMRERGFRRSPEQCKCKWKNLVNRYKGWEGICWDCGLDSTEWPIYNGPCLMQGMSRVESWLTVQAFGMVTTALDHIIYDVSGYRGKETSDPEHSRQCPFFEELHAVFTQRAHNMQRLLLESETRSAQTKKGVKRSSGDRSSEELSEDDDEVEYDSEEEKPSRSNTRKRKVDKVGTDKTSSRANNPSNAVNSSIQEMLKEFFQHQLRMEMQWREMMERRAHERQLFEQEWRQSMEKLERERLIIEQAWREREEQRRMREESRAEKRDALLTTLLNKLINESN 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03307 364 CDD GT1 47 110 - -
Vimu7g03307 364 Pfam Myb/SANT-like DNA-binding domain 47 112 IPR044822 -
Vimu7g03307 364 Gene3D - 49 110 - -
Vimu7g03307 364 SMART sant 45 107 IPR001005 -
Vimu7g03307 364 ProSiteProfiles Myb-like domain profile. 49 105 IPR001005 -
Vimu7g03307 364 MobiDBLite consensus disorder prediction 260 274 - -
Vimu7g03307 364 MobiDBLite consensus disorder prediction 209 224 - -
Vimu7g03307 364 Coils Coil 309 329 - -
Vimu7g03307 364 MobiDBLite consensus disorder prediction 202 274 - -
Vimu7g03307 364 MobiDBLite consensus disorder prediction 239 259 - -
Vimu7g03307 364 FunFam Zinc finger and SCAN domain-containing 20 49 110 - -
Vimu7g03307 364 PANTHER FI21293P1 40 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03307 Vimu-Chr7 28024280 28026166 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03307 47 364 Trihelix Transcription Factor Family AT5G01380 32.934 1.10e-25 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vimu7g03307 Myb_DNA-bind_4 1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03307 - - gmx:100812635 450.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03307 7 28024280 28026166 Vimu7g03307 7 28024280 28026166 ECH