Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03302 ATGCAAAGTGGCAGAGCAACTGAGAAGTCTGATGTGTATAGTTTTGGTGTGTTGACACTCGAAGTGCTGAGTGGAAAGCGACCAACAGATGCAGCATTCATTGAAAAGGGTCTCAATATTGTTGGTTGGTTGAATTTTCTAATTACAGAAAATAGGCCGAGGGAAATTGTTGACCCACTATGTGATGGGGTGCAAGTGGAGAGCCTTGATGCCTTGCTCTCTGTGGCCATTCAGTGTGTCTCCTCAAGTCCAGAAGATCGACCCACTATGCATCGAGTAGTGCAATTGTTTGAATCAGAGGTCGTAACTCCATGCCCTAGTGACTTCTATGATTCCAACTCCGATTAA 348 0.4483 MQSGRATEKSDVYSFGVLTLEVLSGKRPTDAAFIEKGLNIVGWLNFLITENRPREIVDPLCDGVQVESLDALLSVAIQCVSSSPEDRPTMHRVVQLFESEVVTPCPSDFYDSNSD 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03302 115 SUPERFAMILY Protein kinase-like (PK-like) 3 104 IPR011009 -
Vimu7g03302 115 Pfam Protein tyrosine and serine/threonine kinase 2 96 IPR001245 GO:0004672|GO:0006468
Vimu7g03302 115 ProSiteProfiles Protein kinase domain profile. 1 102 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g03302 115 Gene3D Transferase(Phosphotransferase) domain 1 1 105 - -
Vimu7g03302 115 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 2 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03302 Vimu-Chr7 28000066 28000979 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03302 1 106 Receptor kinase-like Gene Family AT2G35620 81.132 1.34e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Vimu7g03302 PK_Tyr_Ser-Thr 3.1e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03302 - - gmx:100819230 227.254