Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03286 ATGGAGGGTGGGAACATAAGACAGTGGTTGAACCTTCTGGTTTGTGCACTGCTGTTGCTGATAGCAGAGGCTTCTTATGTGCCAATCACCTATCTTCAGAACGCTGTAGCAAAAGGAGCTGTTTGCTTGGATGGGAGTCCACCAGCTTACCATTTTGATAGGGGATCTGGAACAGGGATTAACAGTTGGTTGGTTGCTTTTGAGGGAGGAGGATGGTGCAACAATGTCACTACTTGTCTCTCTCGCAAGACCAATCGTTTAGGTTCATCTAAGCAAATGGCAAAGCAAATTGCCTTTTCGGGAATTATGAGTAACAGGCAAATGTTTAATCCAGATTTCTACAACTGGAACAGAATCAAGGTTAGGTATTGCGATGGTTCATCTTTTACTGGTGATGTAGAAGAAGTCAATCCAGTTACTAAGTTGCACTTTAGAGGAGCAAGGATTTTTGCTGCTGTCATGGAGGATTTACTAGCAAAAGGAATGAAAAATGCTCGAAATGCTATTATTTCTGGATGTTCAGCTGGAGGATTAACTTCAGTACTGCATTGTGATCGCTTCCGAGCTCTATTACCTAGAGGAGCCAGAGTGAAATGCCTCTCAGATGCTGGTTATTTTATCAATGCAAGGGATGTCACTGGGGCATACCACATTCAACAGTATTTCAGTCAAGTTGTTGCTACACATGGCTCTGCAAGGAATTTGCCTCAGTCATGCACTTCAAGACTTAGCCCAAAGCTAGTAATGCTTTTTCCCACAATATTTAGCGTCACATATCACTACGCCAATCTTCTTTGTAAACGCAGCATACGACTCATGGCAGCTCTTAATAACTGGAGAGATCTTTCCAGTCCTTTCCCTGATCCTCAGAATGTTGTTTTGATTCAGATTAAGAACATTTTGGCACCTGGTGTTGCTGATCCTGAAGGCCATTGGCATAGCTGTAAGCTTGATATAAACAACTGCTCACCTGATCAATTAGATCTAATGCAAGGCTTCAGGACAGAATTTTTAAGGGCACTGACAGTGCTAGGCAACTCTTCATATAAAGGAATGTTTATAGACTCTTGCTATGCCCACTGCCAAACTGAAATGCAGGAGACATGGTTGAGAAGTGACTCTCCAGAGCTGGAAAAGACAACAATTGCACAGGCTGTAGCAGACTGGTTTTATGAAAGAAGGACTTTCCATCAGATAGATTGCCCTTACCCCTGCAACCCCACTTGTCACAACCGCGTTTTCGAACCACAAGACGACCACCAAGGAGTATAG 1272 0.4324 MEGGNIRQWLNLLVCALLLLIAEASYVPITYLQNAVAKGAVCLDGSPPAYHFDRGSGTGINSWLVAFEGGGWCNNVTTCLSRKTNRLGSSKQMAKQIAFSGIMSNRQMFNPDFYNWNRIKVRYCDGSSFTGDVEEVNPVTKLHFRGARIFAAVMEDLLAKGMKNARNAIISGCSAGGLTSVLHCDRFRALLPRGARVKCLSDAGYFINARDVTGAYHIQQYFSQVVATHGSARNLPQSCTSRLSPKLVMLFPTIFSVTYHYANLLCKRSIRLMAALNNWRDLSSPFPDPQNVVLIQIKNILAPGVADPEGHWHSCKLDINNCSPDQLDLMQGFRTEFLRALTVLGNSSYKGMFIDSCYAHCQTEMQETWLRSDSPELEKTTIAQAVADWFYERRTFHQIDCPYPCNPTCHNRVFEPQDDHQGV 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03286 423 PANTHER NOTUM-RELATED 14 411 IPR004963 GO:0016787
Vimu7g03286 423 Pfam Pectinacetylesterase 22 395 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03286 Vimu-Chr7 27911829 27914901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03286 6 418 Carbohydrate Esterase AT4G19420 56.512 0.0 525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03286 K19882 - gmx:100776478 704.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03286 7 27911829 27914901 Vimu7g03286 7 27911829 27914901 ECH
Vimu7g03286 7 27911829 27914901 Vimu11g00982 11 10209055 10211714 PCT
Vimu11g00980 11 10187148 10190565 Vimu7g03286 7 27911829 27914901 PCT