Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03284 ATGGGGTCCAGTGGCAGCAAAGCCAGGTCATCGTCGTCGTCTTCGGGGAGTTTCAGGAAGGGTCGATCTAAGGGGCACAGAGGTTTCCCATCTTATTGTCTGGGAACGTCGTCTGGATCTCGTGACATTGATAGTGACGACCAGGTTTGTGATCAGAATAAAGTAAACCGAGATGATGTGACATACACCAGTGGCAATGAAATAGACTCAGATGAAGGGAAGACAGAGTCTTTTAGAAAGGTGAAACCTGGTAAGTCTGATGAAGTGCCTTCTAACATTGACCTTGAAGAGTGGCCTCACAGTGCATCCAGAACTGGTAGCAGCTCTGCACATTCTTCTTCAAACCACTCCTTGAACCCCTCAAGTCGGTTCTTGTCTCGCTTTAGCCTTGTTCCTGGTAATATAAGCTTCAGACTTAGCAGAACCACAAGTTTGGGATCATCTAGGCCTTGCCCTGTTTCTTCAACAAGTATCTCAATATTTAATGATGAAGATGAGCTTAGTCTACATTCAGGGCCTCCTGGCAGCTTGATTAATAGAAATGAAACTCAACACCGTAGTGATTTGCTCAATGCATCTTTTGTTAGTCAAGTGCCTATGCAGTGTCATGAAGAAGCTTCTAATAATTTGCGTCCTAATGCCCCAGCATTGGTTTCACCTGGTAATTTGGCTAGTAGTCGCCCAGTTTCTTCTATCCAGGATGTGGGTAGAGATGGAAATGGTGCAAGAGAAGTGCCTGATGCCAACACGTTTTCTCCAAGAATTCATACTGATACAGAAAATATTGAGACTAGACATACTGATAGGCGAAATGGAGCTCGAGAACCTGTGGAACGTAATGTTCGTTTTAGCCGAACTTTAAGTGTTGGAAGGCTCCGTGACAGAGTTCTCCGCCGATCAACATTGTCAGACTTCACCTTTTGCCCTATGCAACGAGAGAGAGAAGTAAGAGAGGCTGGTCAAGAGAATGGAAGACTAGTGGGGGATAGAGAAGCAAGAGTGTCACCAACTGGTCGTAATGCTTCAAATTCTTCTACACCTAGATATCCTCTACCCAGTACACCTAGCTCCTTGTTTGGCATCCAAGACTATGAAGTTGAGACTTCACGGTCTAGAGAAACTAGGTATCAGGATCTGCTGGAACATAGGTCCAATTTCCTGGAACGGAGAAGAAGAATACGGTCCCAGGTCCGTGCTCTTCAGCGGTTGGGTAGCCGGTTTGAAAATCTTTCTGGACATGACAGATCATGTATCTTGTCTGGTCAACATAGAAACGGTCGTTGTGCATGCAGAACCAATAGTCGGGATACCAATTCAAATGATGATACCAATGCTAGAGCTAGCATATCAAGAATTGTTATGCTAGCTGAAGCCTTGTTTGAAGTTCTGGATGAAATTCACCAGCAATCTGTGGTTTTATCTTCCCGCCCTTCTGTGTCATCTATCGGTTCCATTCCTGCACCTAATGAAGTTGTGGAATCCTTACCTGTCAAATTATACACAAAGTTGCACAAACATCAAGAAGAACCTGTACAATGTTATATATGCCTTGTGGAGTATGAGGATGGAGACAGCATGAGAGTTCTGCCTTGTCATCATGAATTTCATACAACGTGTGTAGACAAGTGGCTGAAGGAGATTCACAGGGTGTGCCCGCTATGTCGAGGGGATATCTGTGTATCTGATTCATTGCCAAGGGAGAACTAA 1707 0.4458 MGSSGSKARSSSSSSGSFRKGRSKGHRGFPSYCLGTSSGSRDIDSDDQVCDQNKVNRDDVTYTSGNEIDSDEGKTESFRKVKPGKSDEVPSNIDLEEWPHSASRTGSSSAHSSSNHSLNPSSRFLSRFSLVPGNISFRLSRTTSLGSSRPCPVSSTSISIFNDEDELSLHSGPPGSLINRNETQHRSDLLNASFVSQVPMQCHEEASNNLRPNAPALVSPGNLASSRPVSSIQDVGRDGNGAREVPDANTFSPRIHTDTENIETRHTDRRNGAREPVERNVRFSRTLSVGRLRDRVLRRSTLSDFTFCPMQREREVREAGQENGRLVGDREARVSPTGRNASNSSTPRYPLPSTPSSLFGIQDYEVETSRSRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCACRTNSRDTNSNDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSIPAPNEVVESLPVKLYTKLHKHQEEPVQCYICLVEYEDGDSMRVLPCHHEFHTTCVDKWLKEIHRVCPLCRGDICVSDSLPREN 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03284 568 FunFam Putative RING zinc finger domain superfamily protein 482 560 - -
Vimu7g03284 568 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 477 560 IPR013083 -
Vimu7g03284 568 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 567 - -
Vimu7g03284 568 Pfam Ring finger domain 512 555 IPR001841 -
Vimu7g03284 568 MobiDBLite consensus disorder prediction 101 120 - -
Vimu7g03284 568 ProSiteProfiles Zinc finger RING-type profile. 513 555 IPR001841 -
Vimu7g03284 568 MobiDBLite consensus disorder prediction 258 275 - -
Vimu7g03284 568 MobiDBLite consensus disorder prediction 1 19 - -
Vimu7g03284 568 MobiDBLite consensus disorder prediction 333 357 - -
Vimu7g03284 568 MobiDBLite consensus disorder prediction 336 357 - -
Vimu7g03284 568 MobiDBLite consensus disorder prediction 1 120 - -
Vimu7g03284 568 MobiDBLite consensus disorder prediction 69 94 - -
Vimu7g03284 568 MobiDBLite consensus disorder prediction 221 275 - -
Vimu7g03284 568 SUPERFAMILY RING/U-box 491 561 - -
Vimu7g03284 568 SMART ring_2 513 554 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03284 Vimu-Chr7 27901758 27905724 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03284 232 562 C3H Transcription Factor Family AT5G45290 61.243 3.03e-119 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03284 - - gmx:100815830 932.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03284 7 27901758 27905724 Vimu7g03284 7 27901758 27905724 ECH
Vimu7g03284 7 27901758 27905724 Vimu11g00983 11 10240707 10243508 PCT